Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 >seq6 Length=31808207 Score = 127 bits (140), Expect = 3e-24 Identities = 285/422 (68%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || ||||| || || ||| |||| || | ||| Sbjct 31393705 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGC 31393764 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | ||| ||||| |||| |||| || || | ||| || || ||||||||||| Sbjct 31393765 CTGTTTGTCGCGGCGAGCACAATGACACCGCT---GTTCCCGGCAAATCCATCCATCTCC 31393821 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCAC 12864 |||||||| || |||||||| || || | |||||||| | | | | | || |||| Sbjct 31393822 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--ACCTCCGAGCCCAGCAC 31393879 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924 || ||| | |||||||| |||||||| |||||||| ||||| || || || | Sbjct 31393880 CACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCT 31393939 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 ||| || || | || | || || |||||||||||| || |||| ||| || | Sbjct 31393940 TGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGA 31393999 Query 12985 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 13044 | | || |||| || || ||| || || || || ||||||| ||| || || | Sbjct 31394000 ACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCA 31394059 Query 13045 GGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCA 13103 | || |||||||| || || || || |||| | |||| | | | |||||| |||| Sbjct 31394060 GCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCC 31394118 Query 13104 CC 13105 || Sbjct 31394119 CC 31394120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 227/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 10505 CCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGA 10564 ||||| | || || ||| ||| | || | | ||||| || || || ||| | | Sbjct 1989225 CCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTCA 1989284 Query 10565 ATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCAC 10624 | || ||||| |||| || ||||| | ||| ||| | ||||||||||||||||| | Sbjct 1989285 ACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCGC 1989344 Query 10625 CCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGG 10684 | || || ||| | | ||||| || ||||||||| | || | |||| || Sbjct 1989345 CGCGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAGG 1989404 Query 10685 CGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGAC 10741 || ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1989405 TCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGAT 1989461 Query 10742 ACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAAT 10801 |||| |||||| || || || ||||||| | | || || || || || | | ||| | Sbjct 1989462 TCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGACT 1989521 Query 10802 ATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 | |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1989522 ACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1989562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920