Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 122 3e-22 seq4 87.8 7e-12 >seq3 Length=38314702 Score = 122 bits (134), Expect = 3e-22 Identities = 246/365 (67%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| || | || ||| || | || Sbjct 36567717 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGG 36567776 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| || || ||||||||| | || |||| Sbjct 36567777 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAG 36567836 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||||||||||||| || |||||| ||| | |||||| | || || || ||||| || Sbjct 36567837 GCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 36567896 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 ||||| ||||| | || ||||| || | || || | || | || || Sbjct 36567897 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 36567953 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | | | ||||| ||||||| || ||| |||| || | ||| | ||||| Sbjct 36567954 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACCATTGAG 36568013 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || || ||||| |||||| ||||| || || || || || || Sbjct 36568014 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 36568073 Query 451601 GATAA 451605 || || Sbjct 36568074 GACAA 36568078 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 835930 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 835871 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || || ||||| || Sbjct 835870 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 835811 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || ||||| | |||| | |||| || |||||||| || || |||||||| | Sbjct 835810 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 835751 Query 451445 TATGGA 451450 |||||| Sbjct 835750 TATGGA 835745 >seq4 Length=30391017 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || || | || || || || ||| Sbjct 26504386 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCT 26504445 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||| || || ||||| || || Sbjct 26504446 GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 26504505 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || || | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 26504506 CAACGCCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 26504565 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 26504566 ATCCAGAAGGA 26504576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718096233296