Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 235 4e-56 seq12 105 5e-17 seq2 98.7 8e-15 seq8 86.0 5e-11 >seq3 Length=38314702 Score = 235 bits (260), Expect = 4e-56 Identities = 696/1063 (65%), Gaps = 20/1063 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||||| |||||| |||||||| ||||| || | ||||| ||| || ||||||| Sbjct 36568845 CGGCAGACACATTCAGAATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 36568786 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 36568785 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 36568726 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | | |||||||| | | || || || ||| || ||||| || | Sbjct 36568725 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCAGAGT 36568666 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || | || || ||| || || |||||| || ||||| || || | Sbjct 36568665 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 36568607 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | | Sbjct 36568606 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 36568547 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || |||| | ||| ||| ||||| || || | |||||||| Sbjct 36568546 AGATCCTGCACCTTCTCATTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 36568487 Query 517616 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 ||||| |||||||||||||| |||| | || || |||| || |||||||| |||| Sbjct 36568486 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAAT 36568429 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||||| || ||| |||| || | || ||| || || || | |||| |||| Sbjct 36568428 CCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCTACAAGGACAACATCAT 36568369 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 | || ||| | || |||| |||| |||| | || || || || || | | Sbjct 36568368 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCAT 36568310 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 || || | ||| ||| || || || | ||||| || | ||| || || Sbjct 36568309 TTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATAGAAA 36568250 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 |||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 36568249 TCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGGTC 36568190 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 | || || | |||||||| ||| || || || | || || | | | || | | | Sbjct 36568189 CTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACTGA 36568132 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | |||| ||||||||||| |||| ||| | | || || || || |||| Sbjct 36568131 TATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCAA 36568072 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | ||| | || | || ||| | || | |||| || || | Sbjct 36568071 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTCCT 36568012 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | |||||| || |||||||| | |||||||| || || ||| Sbjct 36568011 CAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCT 36567952 Query 518151 TTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | || | ||| || || ||||||||||| |||| |||||||| ||||| Sbjct 36567951 TCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGC 36567893 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || | || |||||||||||| ||||| || ||||||||||| || || Sbjct 36567892 TCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCTGC 36567833 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||| || || |||||||||||||| | ||| |||| Sbjct 36567832 CTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 36567790 >seq12 Length=19964954 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 5071800 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 5071747 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 5071746 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 5071687 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || |||||||| || || |||||| Sbjct 5071686 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAATCATTGAAGTATGCA 5071627 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 5071626 GGAACAGTAA 5071617 >seq2 Length=37273066 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 34031476 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 34031535 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 34031536 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 34031595 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 34031596 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 34031629 >seq8 Length=21838022 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 18948573 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 18948514 Query 518143 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 18948513 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 18948454 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 18948453 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 18948394 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 || || || ||||| | ||| || || |||||||| || Sbjct 18948393 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 18948355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472