Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 >seq6 Length=31808207 Score = 118 bits (130), Expect = 1e-21 Identities = 278/411 (68%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || | || |||||||| |||||| | || || | ||| | || || ||| Sbjct 31393717 CGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGCCTGTTTGTCGCG 31393776 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| |||| | ||| |||| | |||| ||||||||||| ||||| ||||||| Sbjct 31393777 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 31393834 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 | || || || |||| |||||||| | | | | | ||||||| || ||| | || Sbjct 31393835 TGATGGTCTGCTCCCTCTCATCATTTCCA--CCTCCGAGCCCAGCACCACGCTGCCTCCC 31393892 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCA 16118 ||||||||||| |||||||||||||||||||| || | || || | || || Sbjct 31393893 GACGGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCG 31393950 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || || |||| || | ||| || ||||| || |||| ||| || || | | ||| Sbjct 31393951 AACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGAACTCGGACGCG 31394010 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || || ||| || || | || ||||| | ||| || || || || ||||| Sbjct 31394011 GCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTC 31394070 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 31394071 CCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31394120 Score = 107 bits (118), Expect = 2e-18 Identities = 232/341 (68%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28188940 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28188999 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||||||| |||| | ||| || | ||| || |||| ||||||||| | Sbjct 28189000 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28189053 Query 16037 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 ||||||| | ||| | |||| |||| || |||||||| ||||||| || || || Sbjct 28189054 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 28189113 Query 16091 GCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||| || ||| || | | ||| ||| ||||| || || || ||| || || | Sbjct 28189114 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTC 28189172 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 | ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 28189173 CCACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCT 28189231 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || ||||| || ||| || | ||||||||| || || || Sbjct 28189232 CCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28189272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742306888640