Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 >seq6 Length=31808207 Score = 105 bits (116), Expect = 8e-18 Identities = 278/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || ||||| || || | || || || || ||||| || ||| Sbjct 8542340 CGGTCGAAGCGCCCCGGCCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 8542399 Query 11563 GCAATGACTACAATGCCA--GTCTCATT-GTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || || || | ||| ||| | | |||| |||||||| || ||||| |||||| Sbjct 8542400 GCGATCACGACGACGCCGCCGTCGCCGCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGG 8542459 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCT-GCCGAACGCTTCTTAC 11677 || | |||||| || | ||| ||||| | || | | || |||| |||| | | Sbjct 8542460 TTCAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATCCCCGCGCCG--CGCTGCCGCC 8542517 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG--CCTGTTC 11735 | || ||||| ||||| |||||||| |||| ||||| | | || | || ||||| | Sbjct 8542518 CCACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGCTCGC-CTTGGCCCTGT-C 8542575 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||| || || || ||||||||||| | ||| | | || Sbjct 8542576 GAACAGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAA-CTCGGAGC 8542634 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| || | |||||| || | ||| || ||||| || || || || |||| Sbjct 8542635 CGGACAGCGAGAAGAAGGGCACGCCGGCCTCGCCGGCGATCGCCTTGGCCAGCAGCGTCT 8542694 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || || | || | || || |||| ||||||| | ||||| Sbjct 8542695 TCCCCGTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCACC 8542746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 247/378 (65%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGGG 11651 || || ||||| || || | ||||||||||| ||||| || | |||||| || | Sbjct 31393807 AATCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCACCT 31393866 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 | | | || || ||||| | | ||||| || ||||| ||||| ||||| ||||| || Sbjct 31393867 CCGAGC-CCAGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCA 31393925 Query 11712 CGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 || ||||| |||| ||||| || || | || | || || ||||| || Sbjct 31393926 AGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGAC 31393985 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 ||||| ||| ||||| | | || | || | ||| || || | ||| || || Sbjct 31393986 GAACAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGC 31394045 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACG 11891 || ||| || || || || ||||| || || || || | || |||| ||| || Sbjct 31394046 GACGGCACGCGCCAGCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCAGGCATCCCTT 31394105 Query 11892 GGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTC 11951 |||||||||||| || | ||| || || ||||||||||| || || | ||| Sbjct 31394106 GGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCGACGACCTC 31394165 Query 11952 CTCAAGTTCCTCCTTGGC 11969 || || || |||||| Sbjct 31394166 CTGCAGCTCGAGCTTGGC 31394183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975911653600