Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 >seq6 Length=31808207 Score = 120 bits (132), Expect = 4e-22 Identities = 276/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| |||||| | || || | ||| | || |||||| Sbjct 31393717 CGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGCCTGTTTGTCGCG 31393776 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 31393777 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 31393834 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 | || || || |||| |||||||| | | | | | ||||||| || ||| | || Sbjct 31393835 TGATGGTCTGCTCCCTCTCATCATTTCCA--CCTCCGAGCCCAGCACCACGCTGCCTCCC 31393892 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||||||||| |||||||||||||| || || || || | ||| | || || Sbjct 31393893 GACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAA 31393952 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 || || | ||||| ||| || ||||| || |||| ||| || || | | |||| Sbjct 31393953 CAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGAACTCGGACGCGGC 31394012 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || ||| || || | || ||||| | ||| || || || || ||||| || Sbjct 31394013 GCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTCCC 31394072 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 31394073 GGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31394120 Score = 104 bits (114), Expect = 3e-17 Identities = 229/340 (67%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28188940 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28188999 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 28189000 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28189053 Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || || | |||| |||| || |||||||| ||||||| || || || Sbjct 28189054 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 28189113 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || ||| || || | | || ||||| ||||||| ||| || || || Sbjct 28189114 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGAACCCGGGAGGCACCAACTCC 28189173 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | | | | || | || || || ||| || ||| | Sbjct 28189174 CACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCTC 28189232 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 28189233 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28189272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880