Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3 625 4e-174 seq6 91.5 2e-13 seq9 89.7 6e-13 seq7 89.7 6e-13 seq8 87.8 2e-12 >seq3 Length=38314702 Score = 625 bits (692), Expect = 4e-174 Identities = 741/999 (74%), Gaps = 4/999 (0%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| ||| | ||||| || || |||| ||||| Sbjct 24885161 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 24885102 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 ||| ||| ||||||| || || | ||| | |||||| |||| || || ||||||||| Sbjct 24885101 CGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCA 24885043 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 ||||||| || || || || || ||||| || ||||| || || ||||||| | | | Sbjct 24885042 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 24884983 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 | || ||||| || ||||||||||| || ||||| |||| || || || | |||| Sbjct 24884982 ACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACT 24884923 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | || || || |||||||| ||||| |||| |||||| | || || || ||||||| Sbjct 24884922 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 24884863 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 | || | || | |||||| | |||| | | || ||||||||||||||||||| Sbjct 24884862 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 24884803 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCT 180155 | || || |||||||||| || ||||| ||| || |||||||| ||||| || || Sbjct 24884802 TGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCA 24884744 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || ||||||| ||| | | || ||| | |||||||| |||||||| | ||| Sbjct 24884743 GCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATG 24884684 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 || | || || ||||| || ||||||| ||| |||| ||||| |||||||| |||||| Sbjct 24884683 CCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATC 24884624 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 24884623 CTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 24884564 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCC 180395 || ||||| ||||| |||| |||||| || | | ||||||||||||| || ||| Sbjct 24884563 GCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCC 24884504 Query 180396 CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || | ||||||| ||||||||||| |||||||| || || || || || || ||| Sbjct 24884503 GCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCAT 24884444 Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || || || || || | |||||||| ||||| || |||||||| ||||| | ||| Sbjct 24884443 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 24884384 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||| |||| || |||||||| || || || ||||||||||| | || | || || Sbjct 24884383 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 24884324 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 ||||| ||||| || ||||| ||||| |||||||| || | ||||| | |||||||| Sbjct 24884323 ATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24884264 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 180695 || | || |||||||| || | ||||||| ||| ||| ||||||||||| |||||| Sbjct 24884263 GTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCAC 24884204 Query 180696 GAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 || |||||||||||||||||||| || ||||| || ||| Sbjct 24884203 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 587 bits (650), Expect = 9e-163 Identities = 740/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | || |||||| | | | ||||| ||||| ||||| || |||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | |||||||| ||||||| | || | || || ||| | || || || |||||| Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| ||||||||| |||||| | || ||| |||||| | Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || ||||| | | | | || ||| | | ||||| ||||| Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 24894263 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 24894264 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 24894323 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || ||||| || || || || || || ||||| ||| | | ||||||||||||||||| Sbjct 24894324 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 24894383 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | || || || ||||| ||| | || || || || || ||||| || || Sbjct 24894384 TCTGTTCA-ATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 24894442 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 || ||||| || || ||||| ||||| |||||| |||||||||||||||||||||| || Sbjct 24894443 TTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGG 24894502 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 || || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || Sbjct 24894503 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 24894562 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| ||||| || | | || | || | || | || ||||| Sbjct 24894563 CCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCA 24894622 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 || | |||||||| || ||||| | | | |||||||| |||||||| ||| || Sbjct 24894623 TGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGC 24894682 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 24894683 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTC 24894742 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| ||| |||| ||| |||||| | ||||| |||||||||||||| ||||| Sbjct 24894743 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 24894802 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | || || | | || || ||||| ||||| || Sbjct 24894803 ACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACG 24894862 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 24894863 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 24894922 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 |||||| || || ||||| || || || ||| | ||||| ||| | ||| | ||||| Sbjct 24894923 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 24894982 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || || | ||||||||||| || |||| | || ||||| || Sbjct 24894983 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24895036 >seq6 Length=31808207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/112 (79%), Gaps = 11/112 (10%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 685277 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 685218 Query 141314 CCTACCTGGGGAG-------TCATGC-TTGCT---TAGCTCAGAGGTAGAGC 141354 ||||| ||||||| |||| | || || |||||||| |||||||| Sbjct 685217 CCTACTTGGGGAGATTTGATTCATTCNTTCCTCAGTAGCTCAGTGGTAGAGC 685166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 685190 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 685131 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 685130 CCTACTTGGGGAG 685118 >seq9 Length=18641908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 180474 ATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGG 180533 |||||||| ||||| || |||||||| ||||| | ||||||||| |||| || ||| Sbjct 2646524 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 2646583 Query 180534 CCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 180592 ||||| || || || ||||||||||| | || | || || ||||| ||||| || || Sbjct 2646584 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAA 2646642 >seq7 Length=26849004 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/141 (75%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 181847 GTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTC 181906 ||||| || || ||||| | ||||||||||||| |||||||| || |||||| |||| Sbjct 6920483 GTATTCCTGATTTATCCACGAGGACAATCCAGTTAGTTCTTTGTGCTGAGTTT---TGTC 6920427 Query 181907 ---GCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 181963 | ||||| || | ||| | || || ||||| || |||||||||| ||| | || Sbjct 6920426 ACATCAGCGATATTTCAATTCATCCTATT-CTCCAAGGATTTCATAATTTAACGTTGAAC 6920368 Query 181964 CCCTTCCATATGATGGGTGTT 181984 || || ||||||||||| ||| Sbjct 6920367 CCATTTCATATGATGGGAGTT 6920347 >seq8 Length=21838022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 19549528 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 19549469 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 19549468 CCTACTTGGGGAG 19549456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396708440480