Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 473 1e-128 >seq3 Length=38314702 Score = 473 bits (524), Expect = 1e-128 Identities = 674/943 (71%), Gaps = 4/943 (0%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 24885109 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 24885051 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | ||||| Sbjct 24885050 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 24884991 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | || || ||||| || ||||||||||| || |||| | || || ||||| Sbjct 24884990 TTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 24884931 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| || Sbjct 24884930 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 24884871 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 24884870 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 24884811 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 24884810 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 24884751 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| ||||| ||||| | ||||| ||||||| || |||||||| Sbjct 24884750 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGA 24884691 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||| || || |||||||||||||||||| | || ||||| |||||||| Sbjct 24884690 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 24884631 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 |||||| || |||||||| || |||||| ||| ||||| || | ||||| || || | Sbjct 24884630 TAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCT 24884571 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||||||||| | || || || | | ||||| ||||| || || | Sbjct 24884570 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 24884511 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | || || ||||| ||||| || || || || || || Sbjct 24884510 CGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGC 24884451 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||| ||||| || | |||||||| |||||| || |||||||| | Sbjct 24884450 CGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTC 24884391 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| | || | || ||||| ||| | | ||||| || || | ||||| Sbjct 24884390 TTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTAT 24884331 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281 | || ||||| ||||| | || || ||||| || |||||||| || |||||| || | Sbjct 24884330 TAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA 24884271 Query 170282 ACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAG 170341 | || | | || |||| |||| | | ||| | || || | |||||||||| Sbjct 24884270 A-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAG 24884212 Query 170342 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 | ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 24884211 TAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24884169 Score = 389 bits (430), Expect = 5e-103 Identities = 714/1045 (68%), Gaps = 35/1045 (3%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || |||||||| || ||||||||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || || || ||| || Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || |||||||||||||| |||| |||| | | || | |||| || | || | Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 24894258 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 24894259 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 24894318 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| | |||| ||| |||||||||||| | | |||||||| | | Sbjct 24894319 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 24894378 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | | ||| | | ||||| || ||| | ||||||||| ||||| || | Sbjct 24894379 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTT 24894438 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | | || ||||| |||||||| || || | |||||||||| || || | Sbjct 24894439 TTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTT 24894498 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 24894499 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 24894558 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| ||| || |||| | || | |||| || | Sbjct 24894559 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 24894618 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 ||||||| ||||| ||| | ||||| | | ||| ||| | | || || Sbjct 24894619 TTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC------GGTGATGGTG------ 24894666 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 |||| || ||||| || ||| | || || || | ||||||||||| | Sbjct 24894667 -----CAAA----TACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 24894717 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || || || | || ||||| || || |||||| ||||||| || || ||| | | Sbjct 24894718 TGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 24894777 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||| ||||| | || || || |||| ||| | |||| |||| || Sbjct 24894778 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 24894837 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || || || || || ||||| | || || || || || || || || || | |||| Sbjct 24894838 TAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 24894897 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | ||||| || || || |||||||||||||| || ||||| ||| | || || ||||| Sbjct 24894898 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTC 24894957 Query 171484 GAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| || |||| || || || ||||| || | ||||||| || || || Sbjct 24894958 GTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 24895015 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 ||||| | || ||||| |||||| Sbjct 24895016 TCTACCACGTGGAAACGCTCTTTAA 24895040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212713118080