Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3 655 0.0 seq9 98.7 1e-15 >seq3 Length=38314702 Score = 655 bits (726), Expect = 0.0 Identities = 742/989 (75%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||||||| ||||||| | Sbjct 24885091 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 24885034 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | | || || |||| Sbjct 24885033 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 24884974 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || || || || | ||||| ||||| | Sbjct 24884973 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 24884914 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||| ||| | ||||| || ||||||| | || | | Sbjct 24884913 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 24884854 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | || ||||||||||||||||||||| || || Sbjct 24884853 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 24884794 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 |||| |||||||||||||||||| |||||| || || || || |||||||| || | | Sbjct 24884793 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 24884734 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 | || ||| || | || ||| | |||||||| |||||||| | ||||| | || | Sbjct 24884733 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 24884674 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| ||| | || ||||| |||||||| |||||||| ||||| | Sbjct 24884673 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 24884614 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | || || ||| | || || ||||| ||||| |||||||| || |||||||| ||||| | Sbjct 24884613 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 24884554 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 164442 |||| |||| || ||| || | | |||||||| |||| || ||| || | | Sbjct 24884553 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGG 24884494 Query 164443 GTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTG 164502 |||||| ||||||||||| ||||| || || || ||||| |||||||| ||||| |||| Sbjct 24884493 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 24884434 Query 164503 GTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 164562 | || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | | Sbjct 24884433 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 24884374 Query 164563 CTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCA 164622 |||| |||||||| || || || |||||||| || | ||| || || ||||| |||| Sbjct 24884373 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 24884314 Query 164623 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164682 | || ||||| ||||| |||||||| || | | ||| | || ||||| || | || | Sbjct 24884313 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 24884254 Query 164683 CTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACG 164742 ||||||| || | ||||||| ||| ||| ||||||||||| |||||||| ||||| | Sbjct 24884253 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 24884194 Query 164743 CTCACAACTTCCCTCTGGATCTCGCTGCT 164771 |||||||||||||||| || || |||||| Sbjct 24884193 CTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 590 bits (654), Expect = 7e-164 Identities = 737/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || ||||| |||||||| || |||||||| || | |||||| Sbjct 24894036 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 24894095 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 24894096 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24894155 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| | || |||| Sbjct 24894156 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 24894213 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||| || || || | | | | || ||| | |||| || ||||| || || || | Sbjct 24894214 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 24894273 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||||||||| | ||| ||| | || || || ||| ||||||| || ||||| | Sbjct 24894274 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 24894333 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 ||||||| || ||||| ||||||||| | ||||| |||||| | || || ||| || | Sbjct 24894334 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 24894393 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| ||| | |||||||| || ||||||||||||||| ||| || Sbjct 24894394 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 24894452 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || ||||| ||||| ||||||| || || || ||| || || ||||| Sbjct 24894453 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 24894512 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || | ||| | |||||| | |||||||| ||||| ||||| ||||| || |||||| Sbjct 24894513 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 24894572 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| || | | || | || |||| | || || ||||| | || Sbjct 24894573 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 24894632 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 || || || ||||| | | | || ||||| | ||||||||| ||| || ||| || | Sbjct 24894633 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 24894692 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||| || |||||||| || || || || || ||||| || ||||| Sbjct 24894693 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 24894752 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 24894753 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 24894812 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||||| Sbjct 24894813 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 24894872 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || || ||||| || ||| | ||||| ||||| || || ||||| || |||||||| ||| Sbjct 24894873 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 24894932 Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162 || ||||| || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 24894933 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 24894992 Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || || | |||||||| || ||||| || | || ||||| || Sbjct 24894993 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24895036 >seq9 Length=18641908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 164496 TACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 164555 || ||||| || | ||||||||||| ||| || |||||||| ||||| || |||||| Sbjct 2646509 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTC 2646568 Query 164556 TTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATG 164615 ||| | ||||| |||||||| || || || |||||||| || | ||| || || ||| Sbjct 2646569 TTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATG 2646628 Query 164616 GCATTCAACCTGAA 164629 || ||||| || || Sbjct 2646629 GCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280