Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq3 468 6e-127
seq6 89.7 6e-13
seq1 89.7 6e-13
>seq3
Length=38314702
Score = 468 bits (518), Expect = 6e-127
Identities = 698/988 (71%), Gaps = 2/988 (0%)
Strand=Plus/Minus
Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879
|||||| | ||| |||| || | ||| | |||| | || ||||||||||| |
Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092
Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939
|||||||| || | || ||| | | || || | || ||||| || || |||
Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 24885032
Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999
|| || ||||| || || || | || || ||| | |||||||| | || || |||||
Sbjct 24885031 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAAT 24884972
Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059
|| ||||||||||| || |||| | || || || || | ||||| ||||| ||
Sbjct 24884971 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 24884912
Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119
|||||||| ||| | || ||||| ||||| |||||||| ||||||||| || | | |
Sbjct 24884911 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 24884852
Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179
| |||||| | | ||| | | || ||||| | |||||||||| | | |
Sbjct 24884851 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGT 24884792
Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239
| |||||| | || ||||| ||| ||||||||||| ||||| |||| || ||||
Sbjct 24884791 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 24884732
Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299
|| ||| | | || || | ||||| || ||||||||||||||||| |||| ||
Sbjct 24884731 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 24884672
Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359
|| ||||| |||||||||||| | || ||||| |||||||||||||| || ||||||||
Sbjct 24884671 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 24884612
Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419
|| |||||| ||| ||||| || | || || || || ||||| || ||||| |||
Sbjct 24884611 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 24884552
Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479
|| || || || ||| | | ||||| || || |||||| ||||| || | ||
Sbjct 24884551 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGT 24884492
Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539
|||| || || ||||| ||||| || || || || || || || || ||||| |||||
Sbjct 24884491 TACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGC 24884432
Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599
|| | |||||||| |||||| ||| |||||||| | | | ||||||||| | ||
Sbjct 24884431 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 24884372
Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659
| || ||||| ||| | | ||||| || || | ||||| |||| ||||| |||||
Sbjct 24884371 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 24884312
Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTAC 172718
|| ||||| ||||| ||||||||||| || || ||| || || ||| || || |||
Sbjct 24884311 CTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATAC 24884253
Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778
|||| ||| | | ||| | || || || ||||||||||| ||||| ||| | |||||
Sbjct 24884252 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 24884193
Query 172779 ACACAACTTCCCATTAGACCTTGCTTCT 172806
||||||||||| ||||||| ||| ||
Sbjct 24884192 TCACAACTTCCCTCTAGACCTAGCTGCT 24884165
Score = 367 bits (406), Expect = 2e-96
Identities = 706/1043 (68%), Gaps = 31/1043 (3%)
Strand=Plus/Plus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | |||||||||||| || || ||||| || || | |||||||||||
Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
|| || ||| | ||||||||||| | || | || |||||||| ||| || || ||
Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143
Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130
|| || || |||||||| ||||| | || ||| ||| | ||||| || || |||
Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203
Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185
|| |||||||| ||||| |||| |||| | | || | |||| || | || |
Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 24894258
Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245
|||| || ||||||||||| || ||||||| ||| | || || || |||| |
Sbjct 24894259 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 24894318
Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305
|||| || | ||||| | |||| ||| |||||||||||| | ||||| ||||| | |
Sbjct 24894319 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 24894378
Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365
| | ||| | | ||||| || ||| | ||||||||| ||||| || |
Sbjct 24894379 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTT 24894438
Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425
| | | | || | || || ||||| ||||| | |||||||||| || || |
Sbjct 24894439 TTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTT 24894498
Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485
| || || ||||| || ||||| | ||| | ||| | ||||| || || || || |
Sbjct 24894499 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 24894558
Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545
|||| |||||||| |||||||| ||||| ||| || |||| | || | ||||| || |
Sbjct 24894559 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 24894618
Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605
||||||| ||||| ||| | ||||| | | ||| ||| ||| |||
Sbjct 24894619 TTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC------------GGTGATGGT- 24894665
Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665
| | || ||| | || ||| | || || || | |||||||||||| |
Sbjct 24894666 --------GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 24894717
Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725
|| | || || || | || ||||| || || |||||| | || ||||| || ||| | |
Sbjct 24894718 TGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 24894777
Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785
||||| ||| | ||| | || ||||| |||| ||| | |||| | || ||
Sbjct 24894778 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 24894837
Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845
| || || || || || ||||| | || || ||||| || || || || || | ||||
Sbjct 24894838 TAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 24894897
Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905
| |||||||| || || |||||||||||||| || ||||| ||| | || || |||||
Sbjct 24894898 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTC 24894957
Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965
| || |||||| || || ||||| || ||||| || | |||| || || || ||
Sbjct 24894958 GTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTC 24895017
Query 173966 TACCAAGAGGTAACGCACTTTAA 173988
||||| | || ||||| ||||||
Sbjct 24895018 TACCACGTGGAAACGCTCTTTAA 24895040
>seq6
Length=31808207
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || ||
Sbjct 25016474 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 25016415
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||||||| | ||||||||||||||
Sbjct 25016414 TGGTCCTGGTATGGGTCCTATTGGTGT 25016388
>seq1
Length=41795227
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || ||
Sbjct 27052618 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 27052677
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||||||| | ||||||||||||||
Sbjct 27052678 TGGTCCTGGAATGGGTCCTATTGGTGT 27052704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588051111792320
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