Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 468 6e-127 seq6 89.7 6e-13 seq1 89.7 6e-13 >seq3 Length=38314702 Score = 468 bits (518), Expect = 6e-127 Identities = 698/988 (71%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| || | ||| | |||| | || ||||||||||| | Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 24885032 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | || || ||||| Sbjct 24885031 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAAT 24884972 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 24884971 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 24884912 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||| ||||||||| || | | | Sbjct 24884911 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 24884852 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 24884851 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGT 24884792 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 24884791 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 24884732 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || || | ||||| || ||||||||||||||||| |||| || Sbjct 24884731 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 24884672 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||||||| | || ||||| |||||||||||||| || |||||||| Sbjct 24884671 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 24884612 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 24884611 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 24884552 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || |||||| ||||| || | || Sbjct 24884551 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGT 24884492 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 24884491 TACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGC 24884432 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| ||| |||||||| | | | ||||||||| | || Sbjct 24884431 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 24884372 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| | | ||||| || || | ||||| |||| ||||| ||||| Sbjct 24884371 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 24884312 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTAC 172718 || ||||| ||||| ||||||||||| || || ||| || || ||| || || ||| Sbjct 24884311 CTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATAC 24884253 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| | | ||| | || || || ||||||||||| ||||| ||| | ||||| Sbjct 24884252 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 24884193 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCT 172806 ||||||||||| ||||||| ||| || Sbjct 24884192 TCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 367 bits (406), Expect = 2e-96 Identities = 706/1043 (68%), Gaps = 31/1043 (3%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || ||||| || || | ||||||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || ||| | ||||||||||| | || | || |||||||| ||| || || || Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || |||||||| ||||| |||| |||| | | || | |||| || | || | Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 24894258 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| || ||||||||||| || ||||||| ||| | || || || |||| | Sbjct 24894259 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 24894318 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| | |||| ||| |||||||||||| | ||||| ||||| | | Sbjct 24894319 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 24894378 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | | ||| | | ||||| || ||| | ||||||||| ||||| || | Sbjct 24894379 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTT 24894438 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | | || | || || ||||| ||||| | |||||||||| || || | Sbjct 24894439 TTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTT 24894498 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 24894499 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 24894558 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| |||||||| |||||||| ||||| ||| || |||| | || | ||||| || | Sbjct 24894559 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 24894618 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 ||||||| ||||| ||| | ||||| | | ||| ||| ||| ||| Sbjct 24894619 TTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC------------GGTGATGGT- 24894665 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | || ||| | || ||| | || || || | |||||||||||| | Sbjct 24894666 --------GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 24894717 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || || || | || ||||| || || |||||| | || ||||| || ||| | | Sbjct 24894718 TGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 24894777 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||| | || ||||| |||| ||| | |||| | || || Sbjct 24894778 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 24894837 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || || || || || ||||| | || || ||||| || || || || || | |||| Sbjct 24894838 TAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 24894897 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | |||||||| || || |||||||||||||| || ||||| ||| | || || ||||| Sbjct 24894898 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTC 24894957 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| || || ||||| || ||||| || | |||| || || || || Sbjct 24894958 GTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTC 24895017 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 ||||| | || ||||| |||||| Sbjct 24895018 TACCACGTGGAAACGCTCTTTAA 24895040 >seq6 Length=31808207 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 25016474 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 25016415 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 25016414 TGGTCCTGGTATGGGTCCTATTGGTGT 25016388 >seq1 Length=41795227 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 27052618 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 27052677 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 27052678 TGGTCCTGGAATGGGTCCTATTGGTGT 27052704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051111792320