Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3 686 0.0 seq9 93.3 5e-14 >seq3 Length=38314702 Score = 686 bits (760), Expect = 0.0 Identities = 749/990 (76%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | ||| ||||||| || ||||||||||| || Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | ||||| ||||| Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || ||||||||||| | |||| ||||| || |||||| | ||||| || || || Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 ||||||||||||| | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | |||||| | | ||||||||||| || ||||||||||||||||||||| || ||| Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 || |||||||||||||||||| || |||||| || ||||| || |||||| | || Sbjct 24884792 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 24884733 Query 165183 AGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTAT 165242 |||||| || | || ||| | |||||||| ||||||||||||||||||||| | || || Sbjct 24884732 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 24884673 Query 165243 CTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCC 165302 ||||||||||| |||| |||| | || ||||| ||||| |||||||| ||||||||||| Sbjct 24884672 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 24884613 Query 165303 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 || |||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 24884612 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 24884553 Query 165363 AAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACTAC 165420 | || || || | || | || || |||||| | || || | || | Sbjct 24884552 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA--AACGAATCCGCTAATGAG 24884495 Query 165421 GGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTC 165480 ||||| | ||||| ||||| |||||||| ||||| || || || || || || || || Sbjct 24884494 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 24884435 Query 165481 GGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 165540 || || | || |||||||| || || ||||| || ||||| | ||||||||| | Sbjct 24884434 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 24884375 Query 165541 GCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 165600 || || ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||| Sbjct 24884374 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 24884315 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 || || ||||| ||||| |||||||| ||| | |||||||| || | || | Sbjct 24884314 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 24884255 Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| | | ||||||||| ||| ||||||||||| ||||| || ||||| Sbjct 24884254 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 24884195 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||||| || ||||| |||||| Sbjct 24884194 GCTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 583 bits (646), Expect = 1e-161 Identities = 738/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || ||||| |||||||| || |||||||| || | ||| || Sbjct 24894036 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 24894095 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||| ||||| || || |||| Sbjct 24894096 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24894155 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | || |||| Sbjct 24894156 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 24894213 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 24894214 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 24894273 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | |||||||||||||| | Sbjct 24894274 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 24894333 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGT 166529 | |||||||| ||||| ||||||||| | || || |||||| | ||||| ||| | | Sbjct 24894334 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 24894393 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 | || || || |||||||| | || ||||| || || ||||| || ||| || || Sbjct 24894394 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 24894452 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 || || || || ||||| ||||| ||||||| || || || ||| || || |||| Sbjct 24894453 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 24894512 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| |||| ||| | |||||||| || || ||||| |||||||||||||| Sbjct 24894513 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 24894572 Query 166710 ATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 166769 |||||||| || || || | | || | || |||| | || || ||||| | || Sbjct 24894573 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 24894632 Query 166770 GTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCT 166829 || || |||||||| | | | || ||||| |||||||| ||| || || || | Sbjct 24894633 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 24894692 Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| ||||||||||| || || || |||| |||||| || ||||| Sbjct 24894693 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 24894752 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 24894753 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 24894812 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||||| Sbjct 24894813 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 24894872 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || |||||||| ||| | | ||||| || |||||||| ||||| || ||||| ||||| Sbjct 24894873 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 24894932 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || ||||| || || |||||||| ||| | ||||||||| || ||||| |||||||| Sbjct 24894933 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 24894992 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | | | |||||||||| |||||||| || | || |||||||| ||| Sbjct 24894993 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 24895040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || ||||| || ||||||||||| ||| | ||||||||| || ||||| |||||||| Sbjct 10600881 AATATTCTTTTAAATGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 10600940 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | | | |||||||||| |||||||| || || |||||||| ||| Sbjct 10600941 AATCTTATATTCCCTGAGGAGGTTCTACCACATGGAAACGCTCTTTAA 10600988 >seq9 Length=18641908 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 165490 ATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 165549 || |||||||| || || ||||| || ||||| | ||||||||| | || || ||| Sbjct 2646524 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 2646583 Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAA 165608 |||||||| || || |||||||||||| | ||| |||| || ||||| ||||| || || Sbjct 2646584 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880