Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 >seq2 Length=37273066 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | | ||| || ||||| ||| Sbjct 35540146 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 35540087 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| ||||||| ||||| |||||| Sbjct 35540086 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 35540027 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| |||||| | || ||||||||||| Sbjct 35540026 AGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCTGAGAGAGTATCATAAATG 35539967 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 35539966 CCCTCAATGCTATCATCTTTCAT 35539944 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 35539832 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 35539773 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| |||| || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 35539772 GTACGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 35539714 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| || |||||||| |||| || | | ||| || ||||| ||| | || | Sbjct 35539713 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 35539654 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| |||| || ||| || | |||| ||| || Sbjct 35539653 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 35539605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108715683680