Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3 502 7e-138 >seq3 Length=38314702 Score = 502 bits (556), Expect = 7e-138 Identities = 700/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 24885142 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 24885083 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 24885082 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 24885024 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || || Sbjct 24885023 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 24884964 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 24884963 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 24884904 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 24884903 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 24884844 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 24884843 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 24884784 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 24884783 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 24884724 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| ||||| |||||| |||||| | || || |||||||| Sbjct 24884723 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 24884664 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 24884663 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 24884604 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 24884603 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 24884544 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 || || | || ||||| || || | | || ||| | || || | || Sbjct 24884543 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATT 24884484 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| |||||||| ||||||||||| || || || || || ||||| ||||||| Sbjct 24884483 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 24884424 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||||| Sbjct 24884423 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 24884364 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || || ||||| || Sbjct 24884363 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 24884304 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 || || || ||||| || ||||| ||| | || | | || || ||| ||||||| Sbjct 24884303 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 24884245 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| ||||| || || | ||||| |||||||| ||||||||||| |||| Sbjct 24884244 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 24884185 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 24884184 TCCCTCTAGACCTAGC 24884169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726379091488