Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3 562 9e-156 seq9 84.2 7e-12 >seq3 Length=38314702 Score = 562 bits (622), Expect = 9e-156 Identities = 724/993 (73%), Gaps = 12/993 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 24884165 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 24884224 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 24884225 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 24884281 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 24884282 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 24884341 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||||| |||||| |||||| ||| || Sbjct 24884342 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 24884401 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 24884402 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 24884461 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTT 5545 ||| || ||||||||||| || ||| | || || | || | || || | ||| Sbjct 24884462 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTC--AGTG 24884519 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | ||| || || | |||||||||||| ||| | | || Sbjct 24884520 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 24884579 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| || |||||||||||||| || || |||||| Sbjct 24884580 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCC 24884639 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||||||||| ||||||||||| || || | ||||||||||||| |||| Sbjct 24884640 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 24884699 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | |||||| | || || || | |||| || || ||||| || ||||| Sbjct 24884700 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGA 24884758 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || | | | |||| |||||||| | || || Sbjct 24884759 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACC 24884818 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || ||| || | ||||| | |||||| | || | || | || || || ||||| Sbjct 24884819 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 24884878 Query 5905 GTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 ||| | ||| ||||| | | || |||||||| || || || ||||| || || || || Sbjct 24884879 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 24884938 Query 5965 GTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 || | || | || ||| || || || || |||||||| || |||| ||| || | Sbjct 24884939 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 24884998 Query 6025 GACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAA 6084 || || ||||| || || || || || ||||| || ||||| | ||| || | ||||| Sbjct 24884999 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 24885058 Query 6085 TGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAG 6144 | ||| ||||||||| || | | || ||||| || ||||| ||||| || | || || Sbjct 24885059 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 24885118 Query 6145 GCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| | ||||||||| | ||||| ||||| Sbjct 24885119 ACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 24885151 >seq9 Length=18641908 Score = 84.2 bits (92), Expect = 7e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 5333 TTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGC 5392 || ||||| ||||||||||| || || | || || | ||| || | || || ||| Sbjct 2646642 TTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 2646583 Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| ||||| |||||| |||||| ||| |||||||| |||||||| |||||||| Sbjct 2646582 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 2646523 Query 5453 AGTCTCCCAAAGTA 5466 | || ||||| || Sbjct 2646522 AATCGGCCAAAATA 2646509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649578247432