Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq6 105 5e-18 seq2 87.8 1e-12 seq1 87.8 1e-12 >seq5 Length=26596109 Score = 114 bits (126), Expect = 1e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || | ||| ||| || || || |||||||| | || | || Sbjct 7958003 AGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGG 7958062 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| |||| ||||||| ||||| ||||||| Sbjct 7958063 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGG-GCTGCTGATCCGGGGGAATGCCCTCC 7958121 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | | ||||||| ||| ||||||| ||| Sbjct 7958122 TTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTA 7958181 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || ||||| || ||||| Sbjct 7958182 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 7958219 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| || | || |||| || | |||||| ||||| || Sbjct 7958256 CTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 7958315 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| |||||| || ||| Sbjct 7958316 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 7958375 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | |||||| || ||||| |||| || || || Sbjct 7958376 GTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGAC 7958435 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 7958436 AAAAATCTGCAT 7958447 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| ||||| || ||| || ||||| ||||| || | Sbjct 22858253 CCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCA 22858194 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||||||||| || || || |||| ||| || |||| ||| Sbjct 22858193 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGG 22858134 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| || || | | | ||||| ||| ||| Sbjct 22858133 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 22858074 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| || || ||||||||||| Sbjct 22858073 TCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22858027 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| ||| || || || ||||| |||| Sbjct 22857797 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 22857738 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | | || || | |||||| || ||||| ||||| ||||| || |||| |||| Sbjct 22857737 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 22857678 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || || | | | || || | ||||||| Sbjct 22857677 ATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCCACC 22857618 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||| || || ||||| || ||||| Sbjct 22857617 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22857571 >seq6 Length=31808207 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||| | || || ||| |||||| ||||| |||||||||| Sbjct 28434749 GCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGC 28434808 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| ||| || | |||||| |||||||| || || ||||| || || | || Sbjct 28434809 CAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGG 28434868 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || ||| | | | || |||| ||| || Sbjct 28434869 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGAC 28434928 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || ||||| ||||| || || ||||| |||||||| Sbjct 28434929 CTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 28434976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| ||||| || |||||||| | || | || Sbjct 29029389 AGGCGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTACGG 29029330 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| ||||| ||||| || |||| ||| | ||||||| Sbjct 29029329 CCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 29029270 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || |||| ||| ||||| | || Sbjct 29029269 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTG 29029210 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || |||| || || || || ||||||||| Sbjct 29029209 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATC 29029171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | |||| || || ||| ||| || || || ||||| |||| Sbjct 29029170 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 29029111 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| |||| |||||| ||||| || || || ||||| || |||| ||| Sbjct 29029110 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 29029051 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | ||||| | ||| ||| Sbjct 29029050 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACC 29028991 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || ||||| |||| || || || || |||||||| Sbjct 29028990 TCAAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 29028944 >seq2 Length=37273066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 4567311 AGGCGGAGCACCAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGT 4567370 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| || || | ||||| |||||| Sbjct 4567371 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCC 4567430 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || ||| ||||||| || Sbjct 4567431 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTG 4567490 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 4567491 ATGGTCTTCCCAGTCAAAGTCTTCACGAAGATCTGCAT 4567528 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| || | | | || |||| |||| Sbjct 4567782 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGC 4567841 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || |||| ||||| |||||||||||| ||||| Sbjct 4567842 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4567901 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||||||||| | || || || || || ||| Sbjct 4567902 GCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTC 4567961 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || || |||||||| Sbjct 4567962 AGAGTCTTCACGAAGATCTGCAT 4567984 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | || ||||| ||| || || || ||||| |||| Sbjct 4567985 GCCTCCCCTGAGACGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGC 4568044 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| || | |||||| |||||||| || || ||||| || || | ||| Sbjct 4568045 AAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGGGG 4568104 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | |||||| Sbjct 4568105 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 4568164 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || |||| ||| || || || |||||||| Sbjct 4568165 CTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 4568212 >seq1 Length=41795227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 11039163 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 11039222 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| ||||| || || || ||||| || || | | Sbjct 11039223 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 11039282 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || || | | | || || | ||||| Sbjct 11039283 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 11039342 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||||| || || || || ||||||||| || Sbjct 11039343 CCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 11039395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937544287876