Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 1e-20
seq6 105 5e-18
seq2 87.8 1e-12
seq1 87.8 1e-12
>seq5
Length=26596109
Score = 114 bits (126), Expect = 1e-20
Identities = 157/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || | ||| ||| || || || |||||||| | || | ||
Sbjct 7958003 AGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGG 7958062
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || ||||| ||||| |||| ||||||| ||||| |||||||
Sbjct 7958063 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGG-GCTGCTGATCCGGGGGAATGCCCTCC 7958121
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||||| |||||| | | | ||||||| ||| ||||||| |||
Sbjct 7958122 TTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTA 7958181
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||| || || ||||| || |||||
Sbjct 7958182 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 7958219
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || |||||||| |||| || | || |||| || | |||||| ||||| ||
Sbjct 7958256 CTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 7958315
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || ||||| || |||| ||| | |||||||||||| |||||| || |||
Sbjct 7958316 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 7958375
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||| ||||| | |||||| || ||||| |||| || || ||
Sbjct 7958376 GTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGAC 7958435
Query 48755 AAAAATCTGCAT 48766
||||||||||||
Sbjct 7958436 AAAAATCTGCAT 7958447
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | |||||| ||||| || ||| || ||||| ||||| || |
Sbjct 22858253 CCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCA 22858194
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| ||||||||| || || || |||| ||| || |||| |||
Sbjct 22858193 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGG 22858134
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||| || ||||| || || | | | ||||| ||| |||
Sbjct 22858133 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 22858074
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || || || || | ||| || || |||||||||||
Sbjct 22858073 TCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22858027
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | || | || || ||| ||| || || || ||||| ||||
Sbjct 22857797 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 22857738
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | | || || | |||||| || ||||| ||||| ||||| || |||| ||||
Sbjct 22857737 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 22857678
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| |||||| || || | | | || || | |||||||
Sbjct 22857677 ATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCCACC 22857618
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || ||||| || || ||||| || |||||
Sbjct 22857617 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22857571
>seq6
Length=31808207
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| |||| | ||| | || || ||| |||||| ||||| ||||||||||
Sbjct 28434749 GCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGC 28434808
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | ||| ||| || | |||||| |||||||| || || ||||| || || | ||
Sbjct 28434809 CAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGG 28434868
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| ||||| || ||| | | | || |||| ||| ||
Sbjct 28434869 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGAC 28434928
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || ||||| ||||| || || ||||| ||||||||
Sbjct 28434929 CTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 28434976
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || ||| ||| ||||| || |||||||| | || | ||
Sbjct 29029389 AGGCGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTACGG 29029330
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||||||| ||||| ||||| ||||| || |||| ||| | |||||||
Sbjct 29029329 CCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 29029270
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | || || |||| ||| ||||| | ||
Sbjct 29029269 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTG 29029210
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || || |||| || || || || |||||||||
Sbjct 29029209 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATC 29029171
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| | |||| || || ||| ||| || || || ||||| ||||
Sbjct 29029170 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 29029111
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || |||| |||| |||||| ||||| || || || ||||| || |||| |||
Sbjct 29029110 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 29029051
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| ||||| || || | | | ||||| | ||| |||
Sbjct 29029050 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACC 29028991
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||| || || ||||| |||| || || || || ||||||||
Sbjct 29028990 TCAAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 29028944
>seq2
Length=37273066
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || |||||| ||| || || || ||||| || | || | ||
Sbjct 4567311 AGGCGGAGCACCAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGT 4567370
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| || || || ||||| ||||| || || | ||||| ||||||
Sbjct 4567371 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCC 4567430
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | | || || ||| ||||||| ||
Sbjct 4567431 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTG 4567490
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||| || || || ||||||||
Sbjct 4567491 ATGGTCTTCCCAGTCAAAGTCTTCACGAAGATCTGCAT 4567528
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| |||| || | | | || |||| ||||
Sbjct 4567782 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGC 4567841
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| || || ||||| || |||| ||||| |||||||||||| |||||
Sbjct 4567842 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4567901
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | || || | ||||||||| | || || || || || |||
Sbjct 4567902 GCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTC 4567961
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| ||| || || || ||||||||
Sbjct 4567962 AGAGTCTTCACGAAGATCTGCAT 4567984
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | || | || ||||| ||| || || || ||||| ||||
Sbjct 4567985 GCCTCCCCTGAGACGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGC 4568044
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | | |||| || | |||||| |||||||| || || ||||| || || | |||
Sbjct 4568045 AAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGGGG 4568104
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| |||||||||||| ||||| || || | | | || || | ||||||
Sbjct 4568105 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 4568164
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || || || |||| ||| || || || ||||||||
Sbjct 4568165 CTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 4568212
>seq1
Length=41795227
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||||| || || || ||| || || || ||||| || |
Sbjct 11039163 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 11039222
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || |||| |||| |||||| ||||| || || || ||||| || || | |
Sbjct 11039223 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 11039282
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | ||||||||||| ||||| || || | | | || || | |||||
Sbjct 11039283 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 11039342
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| ||||| || ||||||| || || || || ||||||||| ||
Sbjct 11039343 CCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 11039395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937544287876
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