Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3 538 4e-148 >seq3 Length=38314702 Score = 538 bits (596), Expect = 4e-148 Identities = 725/1007 (72%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 || |||||| | | | || || ||||||||||| || |||||||| || | ||| || Sbjct 24894036 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 24894095 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 24894096 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24894155 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || |||||||| | || ||||||| | |||||| || || | || ||||| || Sbjct 24894156 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAGTT 24894215 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || ||||| || | | | || ||| | | ||||| ||||| || || | || Sbjct 24894216 TCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCACAA 24894275 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| || Sbjct 24894276 GGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATGGG 24894335 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977 || || || ||||| ||||||||| | || || ||||| || || || ||| | | | Sbjct 24894336 GCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-T 24894394 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| ||| | |||||||| || || ||||||||||| ||| ||||| Sbjct 24894395 GCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCT 24894454 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || |||||||| || ||| ||||||| || || ||| ||||| || ||||| || Sbjct 24894455 GATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGAT 24894514 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||||| | | ||| | |||||||| || || ||||| | ||||| || ||||| Sbjct 24894515 ATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 24894574 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| ||||| || | || || | || |||||| ||||||||||| | || || Sbjct 24894575 GATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGT 24894634 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 ||||| || ||| ||||| || || ||||||||||| || ||| | | || Sbjct 24894635 GGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 24894694 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| |||||||| |||||||| || || ||||| ||||| || ||||| || Sbjct 24894695 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGG 24894754 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | || Sbjct 24894755 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACCGG 24894814 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| |||||||| | | || || ||||| ||||| ||||| || || || Sbjct 24894815 TTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTT 24894874 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| ||||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 24894875 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 24894934 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || || || || || | ||||| ||| ||||| || ||||| || |||||||| Sbjct 24894935 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 24894994 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 |||| ||||| || || || | || | || ||||| ||||||| Sbjct 24894995 TCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 24895041 Score = 535 bits (592), Expect = 5e-147 Identities = 713/988 (72%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| | | || || ||||| Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | |||||||| ||||| |||||||| | || Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||| || ||||| ||| ||||| || || ||||||||||| || | || Sbjct 24884792 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 24884733 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || | || ||| | |||||||| ||||||||| | ||||| | || || Sbjct 24884732 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 24884673 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 ||||| || ||||||| ||| |||| ||||| |||||||| |||||||| ||||| || Sbjct 24884672 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 24884613 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || ||||| || || |||||||| ||||| || || || ||| || |||||||| Sbjct 24884612 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 24884553 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || |||||| | || | || || ||||||| || || || | || Sbjct 24884552 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGG 24884493 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||||| ||||||||||| |||||||| || || || || || || ||||| || || || Sbjct 24884492 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 24884433 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGC 163670 || || |||||||||||||| || |||||| | | | ||||||||| |||| Sbjct 24884432 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 24884373 Query 163671 AGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAA 163730 || |||||||| || || || ||||| ||||| | || | || || ||||| ||||| Sbjct 24884372 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 24884313 Query 163731 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACAC 163790 || ||||| ||||| |||||||| || | ||||| | || ||||| || | || || Sbjct 24884312 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 24884253 Query 163791 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 163850 |||||| || | | ||||| ||| ||| ||||||||||| ||||| || ||||| || Sbjct 24884252 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 24884193 Query 163851 ACACAACTTCCCACTCGATCTTGCTGCT 163878 ||||||||||| || || || |||||| Sbjct 24884192 TCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563209515518560