Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq3 603 1e-167 seq7 93.3 4e-14 >seq3 Length=38314702 Score = 603 bits (668), Expect = 1e-167 Identities = 704/948 (74%), Gaps = 2/948 (0%) Strand=Plus/Minus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATT 8346 |||| ||||| || ||| | |||||||| ||| || ||| |||| || | || ||| Sbjct 24885111 TCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATT 24885053 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| Sbjct 24885052 ATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 24884993 Query 8407 TCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATT 8466 ||| | | ||||| ||||| || ||||||||||| || |||| | ||| || || Sbjct 24884992 TCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATC 24884933 Query 8467 GGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGT 8526 || | ||||| ||||| || |||||||| || ||| ||||||||||| | ||||| || Sbjct 24884932 GGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGC 24884873 Query 8527 GGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGT 8586 |||||||| |||| | ||| | |||||| | ||||| || | ||||||||||||| Sbjct 24884872 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 24884813 Query 8587 GAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCT 8646 || |||||||| || ||| || || |||||||||||||| ||||||||| || ||| Sbjct 24884812 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 24884753 Query 8647 CCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCT 8706 |||||||| |||||| ||||||| ||| | | || ||| |||||||||| |||||| Sbjct 24884752 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 24884693 Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766 |||||||||||| | || || || ||||| ||||||| |||| |||| |||||||| ||| Sbjct 24884692 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 24884633 Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCT 8826 || |||||||| ||||| || || |||||| | ||||| |||||||| |||||||| || Sbjct 24884632 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 24884573 Query 8827 CTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAA 8886 || || || ||||||||||| | || || ||| || | | || ||||| ||| Sbjct 24884572 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA 24884513 Query 8887 ACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT 8946 | ||| || || | || |||| || |||||||| || || ||||| || ||||| Sbjct 24884512 AACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 24884453 Query 8947 GCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGA 9006 ||||||||||| || ||||| || || |||||||||||||| ||||||||| ||| | Sbjct 24884452 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGT 24884393 Query 9007 AGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGC 9066 || || |||||| | ||||| |||||||| || || || ||||| || || | || Sbjct 24884392 TCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGT 24884333 Query 9067 GTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGA 9126 | || ||||||||||| || || || ||||| |||||||| || | | || | Sbjct 24884332 ATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGC 24884273 Query 9127 CAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAA 9186 ||||| || || | || || ||||| || | | ||||| || || ||||||||| Sbjct 24884272 CAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAA 24884213 Query 9187 GTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 || ||||||||| | || || ||||||||||| || ||||| || ||| Sbjct 24884212 GTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 529 bits (586), Expect = 2e-145 Identities = 716/998 (72%), Gaps = 0/998 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| | | | || || ||||||||||| || |||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || |||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 24894263 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 || || | || || ||||| || ||| || | || || || ||| ||||||| Sbjct 24894264 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 24894323 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || ||||| || || || || |||| || || |||||||| || ||||| || || | Sbjct 24894324 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 24894383 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | || ||||| ||||| || | || ||||| || || ||||||||||| Sbjct 24894384 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 24894443 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 || ||||| || |||||||| || || || |||||||||||||||||||||| ||| Sbjct 24894444 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 24894503 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || Sbjct 24894504 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 24894563 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || ||||||||||||||||| || || | || | ||| || |||| || || || Sbjct 24894564 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 24894623 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | || || |||||||| || | | | || || || ||||| || ||| ||| Sbjct 24894624 GGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCT 24894683 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || ||||| || || |||||| Sbjct 24894684 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCC 24894743 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||||| |||||| Sbjct 24894744 CAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTA 24894803 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | ||||||| | | || || ||||| || || ||| Sbjct 24894804 CCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGT 24894863 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || || || || ||| | || | |||||||||||||||||||| ||| Sbjct 24894864 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 24894923 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 || || || ||||| ||| | ||||| ||| ||||||| ||||||||| | || || Sbjct 24894924 TACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAG 24894983 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| || | ||||| || || ||||| || Sbjct 24894984 CCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 24895021 >seq7 Length=26849004 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 10238 GTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTC 10297 || ||||| || ||||||| ||||| || |||| |||||||| || |||||| | | Sbjct 6920483 GTATTCCTGATTTATCCACGAGGACAATCCAGTTAGTTCTTTGTGCTGAGTTTTGTCACA 6920424 Query 10298 GCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCC 10357 | ||||| || | ||| | || ||| |||| || |||||||||| ||| | || || Sbjct 6920423 TCAGCGATATTTCAATTCATCCTATTC-TCCAAGGATTTCATAATTTAACGTTGAACCCA 6920365 Query 10358 TTCCATATGATGGGAGTT 10375 || ||||||||||||||| Sbjct 6920364 TTTCATATGATGGGAGTT 6920347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479922528000