Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 134 9e-26 seq6 111 1e-18 seq4 109 4e-18 seq12 104 2e-16 seq2 96.9 2e-14 seq5 91.5 1e-12 >seq3 Length=38314702 Score = 134 bits (148), Expect = 9e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || |||||||| || | || ||||||||||||| Sbjct 36567790 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 36567849 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| |||||||||||| | ||||| || ||||| |||||||| || ||| Sbjct 36567850 CCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 36567909 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 36567910 TTGCTTATGGTCTTGACAAGAA 36567931 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || || || |||||| || || | | || Sbjct 835930 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 835871 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| || Sbjct 835870 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 835811 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | || || || ||| |||| | | || || |||||||| || || || || || || Sbjct 835810 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 835751 Query 474860 TATGG 474864 ||||| Sbjct 835750 TATGG 835746 >seq6 Length=31808207 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || || || | | ||| || |||||||| |||||||| || |||||||| Sbjct 28435026 TTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGC 28435085 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||| || ||||||||||||||||| || ||| | ||||| |||||| Sbjct 28435086 TGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCA 28435145 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| || || || || ||||| ||||| || || || || Sbjct 28435146 GAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 28435201 >seq4 Length=30391017 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| | | || |||||||| || ||| Sbjct 26504607 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 26504550 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| |||||||| ||||| ||||| || || ||||| || Sbjct 26504549 GTACGCCCATCCTCAAGCTGCTTACCAGCAAAGATAAGGCGTTGCTGGTCCGGAGGGATG 26504490 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || |||||||| |||||||| || ||| ||||| ||||||| | | | | | Sbjct 26504489 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCAGAGGACTCGACCTCC 26504430 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| | || || || || ||||| ||||||||||| || || Sbjct 26504429 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 26504389 >seq12 Length=19964954 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || |||||||| || | |||||| |||||||| Sbjct 5071610 GCAGTGGTTACTGTTCCTGCATACTTCAATGATTCACAGAGGACAGCAACAAAAGATGCT 5071669 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | |||||||| | | ||| | || ||||| ||||| || || || || | ||| Sbjct 5071670 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTGCTGCATCCCTT 5071729 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 5071730 GCTTATGGTTTTGAGAAGAA 5071749 Score = 86.0 bits (94), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 || || || |||||||| || | || ||||| ||||||||||| | |||||||||||| Sbjct 5075207 GATGGAATCCCTCCTGCACCACGTGGTGTTCCACAAATTGAAGTCAAGTTTGATATTGAT 5075266 Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || ||||||||||| |||| ||||| |||||| Sbjct 5075267 GCCAATGGTATTCTCTCTGTTGCTGCTATTGATAA 5075301 >seq2 Length=37273066 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| |||||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 34031603 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 34031544 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | || || ||||||||||| || || || || Sbjct 34031543 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 34031484 Query 474857 GCTTATGG 474864 ||||||| Sbjct 34031483 TCTTATGG 34031476 >seq5 Length=26596109 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| ||||| || || || ||| || | || || ||||| || || Sbjct 22857563 CGAAGGCGGAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 22857504 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||| || || ||||| || || || || || ||||| Sbjct 22857503 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 22857444 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| || ||| ||||| ||||| | | | |||||| Sbjct 22857443 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGG 22857384 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 22857383 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 22857346 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| || ||||| || || || || || ||||| ||||| || |||||| Sbjct 7958749 TCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTG 7958808 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || |||||||| |||||| ||||| || |||| | | || ||||| || Sbjct 7958809 TCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATG 7958868 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || || || || Sbjct 7958869 GTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 7958900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178685261776