Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3 583 1e-161 >seq3 Length=38314702 Score = 583 bits (646), Expect = 1e-161 Identities = 737/1013 (73%), Gaps = 0/1013 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 24895036 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 24894977 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 24894976 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 24894917 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 24894916 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 24894857 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || || | | || || | ||| |||| | ||| | || || ||||| Sbjct 24894856 TTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAAT 24894797 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 24894796 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 24894737 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || || || || || |||||||||||||| ||||| |||| || | | || || | Sbjct 24894736 AAGCGATTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGG 24894677 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||| || ||| | |||||||| ||||| || | || || || Sbjct 24894676 AAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATA 24894617 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| |||||||| | | Sbjct 24894616 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 24894557 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | |||||| | ||||| |||||||||||| || ||||| Sbjct 24894556 GTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAA 24894497 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||| || || || ||||| || || || || |||||| Sbjct 24894496 CTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAA 24894437 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||||||| || |||||||| | ||| ||||| || || || | | || ||| ||| Sbjct 24894436 ACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCGAGCA 24894377 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || ||||| || || |||||||| |||||| Sbjct 24894376 AGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAAA 24894317 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||| ||||| || ||||| Sbjct 24894316 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCAT 24894257 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 ||||| | | ||| || | | | | ||||| || || || || || || | |||| Sbjct 24894256 AGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAA 24894197 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 || |||||| | || | ||| | || ||||||||||| ||||| |||| || Sbjct 24894196 TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTT 24894137 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669 || || |||| ||| || || | |||| ||||||| |||||||| | ||| |||||| Sbjct 24894136 GTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGAC 24894077 Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 || || ||||| ||||| || || | | | |||||| |||| || ||||| Sbjct 24894076 CATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 24894024 Score = 554 bits (614), Expect = 6e-153 Identities = 726/1008 (72%), Gaps = 5/1008 (0%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 24884165 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 24884224 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | ||||| | Sbjct 24884225 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 24884284 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| || ||||| ||||| || |||| ||| | || || Sbjct 24884285 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 24884344 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| || || ||||| || | |||||||| Sbjct 24884345 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 24884404 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 || || ||||||||||| || || || || |||||||||||||| || || || || Sbjct 24884405 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 24884464 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || ||||||| | || ||||| ||||||| || || Sbjct 24884465 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 24884524 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||||||||||| || ||||| |||| Sbjct 24884525 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 24884583 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||||| || || ||||| || |||||||| || || |||| Sbjct 24884584 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGA 24884643 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || || || || || ||||||||| |||| ||||| | Sbjct 24884644 ATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTC 24884703 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| ||||| | |||||| || || | ||||| ||||||||||| || |||| Sbjct 24884704 CTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 24884763 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| || ||||| ||||||||| | || |||||||||||| ||||||| Sbjct 24884764 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATAT 24884823 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | |||||| | || | || | ||||||| || || || | Sbjct 24884824 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 24884883 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||||||||||| |||||| ||||||||||| || || ||||| | || || || | Sbjct 24884884 ACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAG 24884943 Query 103950 AGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGG 104009 | | |||| || ||||||||||| || ||||| ||||| | | ||||||| || | Sbjct 24884944 AAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAG 24885003 Query 104010 GTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAG 104068 | |||||||| || || ||||| || ||||| || || | ||| || | || || ||| Sbjct 24885004 GCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAG 24885063 Query 104069 ATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGG 104128 | ||||| | ||| | || |||||||||| ||||||||||| || | || |||||| Sbjct 24885064 A-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGG 24885122 Query 104129 TTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || | || || | ||| | ||||||| | ||||| ||| |||| Sbjct 24885123 TTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 24885169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513504972960