Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3 511 1e-140 seq9 96.9 1e-15 >seq3 Length=38314702 Score = 511 bits (566), Expect = 1e-140 Identities = 689/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 24884169 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24884228 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | |||| Sbjct 24884229 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 24884288 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | ||||||||||| ||| | || | |||| ||| Sbjct 24884289 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 24884348 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| ||||| |||||||| ||||| | ||||| || | | ||| || || ||||| Sbjct 24884349 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 24884408 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || |||||||| |||||| Sbjct 24884409 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 24884468 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| ||||||| | || || | | |||||| || || | Sbjct 24884469 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCTG 24884528 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 24884529 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 24884588 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| || Sbjct 24884589 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 24884648 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || ||||| || || |||||| ||||||| ||| || || Sbjct 24884649 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 24884708 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || |||| | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 24884709 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 24884768 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | || ||||||||||| || ||||| ||| | Sbjct 24884769 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 24884828 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||| ||||| | ||| Sbjct 24884829 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 24884888 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | |||||||||||||||||||| ||||| | |||||| || | | Sbjct 24884889 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 24884948 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| || || | | || |||| || || || Sbjct 24884949 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 24885008 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || | | |||||||||||||| || || Sbjct 24885009 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 24885068 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 |||| ||| ||| | || ||||| | || ||||||||||| | ||||||||||| Sbjct 24885069 GCGGTCAATAAGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 24885124 >seq9 Length=18641908 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 21615 TTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674 ||||||||||| ||| | || | |||| |||||||| ||||| |||||||| ||| Sbjct 2646636 TTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCA 2646577 Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734 || | ||||| || | | ||| || || ||||| ||||||||||||||||| | || Sbjct 2646576 GCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGG 2646517 Query 21735 CCAAAATA 21742 |||||||| Sbjct 2646516 CCAAAATA 2646509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207979165360