Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 477 1e-129 seq6 86.0 7e-12 seq1 86.0 7e-12 >seq3 Length=38314702 Score = 477 bits (528), Expect = 1e-129 Identities = 702/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 24884169 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24884228 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | | |||| |||| || | | || || || |||||| || || Sbjct 24884229 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGA 24884287 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||| || || | ||||| ||||| || | ||||| | || || || Sbjct 24884288 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 24884347 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | | ||| ||||| || | || | ||||||||| | | | |||||||| || Sbjct 24884348 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 24884407 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 |||||| |||||||| | || ||||| ||||| || || || || || || || || Sbjct 24884408 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 24884467 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||| ||||| || || | ||||| | || || || | || || ||||| || Sbjct 24884468 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCT 24884527 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||| | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 24884528 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 24884587 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || ||||| ||| |||||| || |||||||| || |||||||||||||| ||||| || Sbjct 24884588 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 24884647 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 | |||||||||||||||||| || || || | ||||||||||||||||| || || Sbjct 24884648 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 24884707 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 ||||| ||||| | ||||| ||||| ||||| | || || |||||||| ||||| Sbjct 24884708 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 24884767 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 | |||||||||||||| || | | | | |||||||||| | ||||| || Sbjct 24884768 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 24884827 Query 124708 TGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 | | ||||| | |||||| | || | | || ||||||||| ||||| || ||||| Sbjct 24884828 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 24884887 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 |||||||||| ||| |||||||| |||||||| ||||| | |||||| || || | Sbjct 24884888 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 24884947 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 |||| || ||||||||||| || ||||| || || | |||||||| | || || || Sbjct 24884948 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 24885007 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTG 124946 | || || || ||||| || ||||| || || || || || | || || ||| | | Sbjct 24885008 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 24885066 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGT 125006 ||| || | |||| || ||||| | |||||| ||||| || | |||| | ||| | Sbjct 24885067 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT-T 24885125 Query 125007 TTGTTGAT-GTTACCCACTCACAGAA 125031 | | || | |||| ||| | ||||| Sbjct 24885126 TCGGTGCTAGTTATCCAGTTGCAGAA 24885151 Score = 376 bits (416), Expect = 3e-99 Identities = 708/1043 (68%), Gaps = 31/1043 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 24895040 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 24894981 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 24894980 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 24894921 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 24894920 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 24894861 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || || || | || |||| |||| | ||| |||| || || Sbjct 24894860 TAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTAC 24894801 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 24894800 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 24894741 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | || || || | ||| |||||||||||| | || || || | || || Sbjct 24894740 CCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 24894681 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | | ||| ||| ||| ||| | | || Sbjct 24894680 GCGGAAGGTATTTGC---------ACCATCACC------------GTCCTCAAATAGAGT 24894642 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | ||| ||||| |||||||| || ||||| | || | |||| || ||| ||||| Sbjct 24894641 GTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 24894582 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 24894581 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAA 24894522 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| | || || ||||| Sbjct 24894521 TCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGG 24894462 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | | || || ||||| ||||||||| | ||| || || Sbjct 24894461 ATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATA 24894402 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| | || | |||||||| | | |||||||||||| ||| | Sbjct 24894401 AGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGC 24894342 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 24894341 AAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 24894282 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTCA 123700 ||||||||||| || ||||| || | || | || | || | | |||| Sbjct 24894281 ATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG---- 24894226 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATA 123760 |||| ||||| |||||||| |||||||| || || || | ||| ||| || | Sbjct 24894225 -CAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAAT 24894167 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| |||||||| || || || || || || ||| |||||||| || | | | | Sbjct 24894166 CCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAA 24894107 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | ||| || || ||||||||||||| || |||||||| || || | Sbjct 24894106 TAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGT 24894047 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 ||||||||||| | || |||||| Sbjct 24894046 AACCAGTCGTCCATAATATCAAA 24894024 >seq6 Length=31808207 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 25016388 ACACCAATAGGACCCATACCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 25016447 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 25016448 AGGTTAAGGTGGCAAACATCTGCTCCA 25016474 >seq1 Length=41795227 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 27052704 ACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 27052645 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 27052644 AGGTTAAGGTGGCAAACATCTGCTCCA 27052618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998313150240