Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 576 2e-159 seq9 102 1e-16 >seq3 Length=38314702 Score = 576 bits (638), Expect = 2e-159 Identities = 706/961 (73%), Gaps = 2/961 (0%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 24884165 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 24884224 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 24884225 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 24884284 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| |||||||||||||| || | ||| | || || Sbjct 24884285 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 24884344 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || || || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 24884345 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 24884404 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || || || || || ||||| || || || || || || Sbjct 24884405 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 24884464 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || | ||||| | || || || ||||||| || || Sbjct 24884465 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 24884524 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 24884525 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 24884584 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| || || ||||||||||| Sbjct 24884585 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 24884644 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| |||| ||||||||||| || || | ||||||| |||| |||||| || Sbjct 24884645 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 24884704 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | ||| || | | ||| || ||| | ||||| || || ||||| |||||||| Sbjct 24884705 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 24884764 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| |||||||| Sbjct 24884765 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 24884824 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | ||||||| || || || || Sbjct 24884825 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 24884884 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||||||||| | ||||| |||||||| |||||||| ||||| | ||||| || || Sbjct 24884885 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 24884944 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || |||||||| || || ||||| || || | | ||||||| ||| || Sbjct 24884945 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 24885004 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 ||||||||||| |||||||| || || || || |||||||| |||| ||| || |||| Sbjct 24885005 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 24885064 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||||||||| || | || | ||||| Sbjct 24885065 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 24885123 Query 27689 T 27689 | Sbjct 24885124 T 24885124 Score = 538 bits (596), Expect = 5e-148 Identities = 737/1023 (72%), Gaps = 10/1023 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 24895041 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 24894985 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 24894984 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 24894925 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || || || || ||||| | Sbjct 24894924 AGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGG 24894865 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || ||||| || || | | |||||||| | | ||| | ||| |||| | Sbjct 24894864 CACGTAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCG 24894805 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| || |||||||| |||||| ||| ||||| || ||||||| Sbjct 24894804 GTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTT 24894745 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | |||||||| ||||| || || ||||| ||||| || || || | ||||| | | | Sbjct 24894744 GGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAA 24894685 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || || || ||||| || || || ||| | || || || || || || | | Sbjct 24894684 AAGCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCC 24894625 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 |||||||||| | || || || | || | || || ||||||||||||||||| || | Sbjct 24894624 CATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATG 24894565 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | |||||| |||||||| || |||| |||||| | ||| | || ||||| || | Sbjct 24894564 GGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTA 24894505 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 | || ||||||||||||||||||||| || || |||| ||||| || |||||||| | Sbjct 24894504 CGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGG 24894445 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || ||||| || || ||||| || | ||| ||||| || || || | | || | Sbjct 24894444 AAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAAC-A 24894386 Query 24043 GAC-GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGA 24101 ||| | || |||||||| ||||||||||| |||||||| |||||||| || || |||||| Sbjct 24894385 GACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGA 24894326 Query 24102 GCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCA 24161 |||||||| | ||| || || || | ||| ||| || ||| |||||||| | || Sbjct 24894325 GCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCC 24894266 Query 24162 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCC 24221 || ||||| ||||| | | ||| || | | | | ||||| || || || ||||| Sbjct 24894265 GGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCG 24894206 Query 24222 GT-AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGT 24280 || |||||| || ||| || | ||||||||| || | ||||||||| |||||| || Sbjct 24894205 GTTAAGAAA-TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGT 24894147 Query 24281 AACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAG 24340 ||||||| ||| || |||| |||||| || | || | ||||||| |||| ||| | Sbjct 24894146 TACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAA 24894087 Query 24341 GAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTC 24400 || |||||||| || ||||| ||||| || |||| | | ||||||||||| || || Sbjct 24894086 TAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATC 24894027 Query 24401 AAA 24403 ||| Sbjct 24894026 AAA 24894024 >seq9 Length=18641908 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26872 TTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGC 26931 || |||||||||||||| || | ||| | || |||||||| || || || || ||| Sbjct 2646642 TTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 2646583 Query 26932 CATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATC 26991 || ||||| | ||||||||| || ||||| |||||||| || ||||||||||||||| Sbjct 2646582 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 2646523 Query 26992 AAACGACCGAAGTA 27005 || || || || || Sbjct 2646522 AATCGGCCAAAATA 2646509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840