Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 >seq6 Length=31808207 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 31394120 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGGAAGACACTG 31394061 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| ||||||| || | || |||||| || ||| | || | | Sbjct 31394060 CTGGCGCGTGCCGTCGCGGGGGAGGCCGGAGTGCCATTCTTCTCCTGCGCCGCGTCCGAG 31394001 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| |||||| ||||| | || || || || | ||| Sbjct 31394000 TTCGTCGAGCTGTTCGTCGGTGTCGGTGCCTCCAGGGTCAGGGACCTGTTCGAGAAGGCC 31393941 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||||||||| |||||||| || || | ||| || Sbjct 31393940 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 31393881 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| | | | | | |||||| ||||| || || || || || || || | | Sbjct 31393880 GGTGCTGGGCTCGGAGG--TGGAAATGATGAGAGGGAGCAGACCATCAACCAGCTCTTGA 31393823 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 31393822 CGGAGATGGATGGATTTG 31393805 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| ||||||| ||||| || | | || Sbjct 28189191 TTTGTGGAGATGTTTGTGGGAGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCA 28189132 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 28189131 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 28189072 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| | || || Sbjct 28189071 GGAACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTGACT 28189012 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 28189011 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 28188952 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 28188951 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 28188911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560