Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3 551 7e-152 >seq3 Length=38314702 Score = 551 bits (610), Expect = 7e-152 Identities = 712/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 24884169 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24884228 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 24884229 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 24884288 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| || || || ||||| || | |||||| | || ||| ||| Sbjct 24884289 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 24884348 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | ||| || || | | ||| | ||||||||| | | | | ||||||||| Sbjct 24884349 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 24884408 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| ||||| || |||||||| || ||||||||||| ||| Sbjct 24884409 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 24884468 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || || || | |||||| || || ||| Sbjct 24884469 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCTG 24884528 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 24884529 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 24884588 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 24884589 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 24884648 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || ||| Sbjct 24884649 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 24884708 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| || || | ||||| || || |||||| | || ||||| |||||| ||| Sbjct 24884709 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 24884768 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| | Sbjct 24884769 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 24884828 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | || ||| ||||| || || || |||||| Sbjct 24884829 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 24884888 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | |||||||||||||| || || ||||| ||||| || || |||| Sbjct 24884889 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 24884948 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | ||||||||||| || |||||||| || | || ||||| | |||||| ||| Sbjct 24884949 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 24885008 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || || || ||||| || || || | ||||| || || Sbjct 24885009 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 24885068 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 || | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| | Sbjct 24885069 GCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 24885128 Query 8851 GTACTTGTAACCCACTCGCAAAA 8873 || || || | ||| | ||| || Sbjct 24885129 GTGCTAGTTATCCAGTTGCAGAA 24885151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862307620640