Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3 502 7e-138 >seq3 Length=38314702 Score = 502 bits (556), Expect = 7e-138 Identities = 700/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 24884169 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24884228 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 24884229 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 24884287 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 24884288 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 24884347 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 24884348 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 24884407 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 24884408 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 24884467 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 24884468 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCT 24884527 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 24884528 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 24884587 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 24884588 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 24884647 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 24884648 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 24884707 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 24884708 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 24884767 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 24884768 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 24884827 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 24884828 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 24884887 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | |||||| || ||| | Sbjct 24884888 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 24884947 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 24884948 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 24885007 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | || Sbjct 24885008 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 24885066 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 24885067 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 24885126 Query 26835 CAGTACTTGTAACCCA 26850 | || || || | ||| Sbjct 24885127 CGGTGCTAGTTATCCA 24885142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711978951040