Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3 517 3e-142 >seq3 Length=38314702 Score = 517 bits (572), Expect = 3e-142 Identities = 717/993 (72%), Gaps = 12/993 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 24884165 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 24884224 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 24884225 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 24884283 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 24884284 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 24884343 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | ||| ||| Sbjct 24884344 TGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 24884402 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 24884403 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 24884462 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 24884463 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTT 24884522 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 24884523 TCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCG 24884579 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 24884580 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCC 24884639 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 24884640 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 24884699 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| Sbjct 24884700 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 24884759 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 24884760 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 24884819 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||| Sbjct 24884820 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 24884879 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 |||| |||||| || | | | |||||||| |||||||| || || | |||||| || Sbjct 24884880 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 24884939 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct 24884940 GCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAA 24884999 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || |||||||| || ||||| |||||||| || || || ||||| |||||||| || || Sbjct 24885000 ACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAAT 24885059 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | || ||||| | ||||| ||||| || | ||| || Sbjct 24885060 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 24885118 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| ||||||||||| | |||||| || || Sbjct 24885119 ACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 24885151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408