Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3 664 0.0 seq9 98.7 1e-15 seq8 87.8 2e-12 seq6 87.8 2e-12 >seq3 Length=38314702 Score = 664 bits (736), Expect = 0.0 Identities = 744/989 (75%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 24884165 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 24884224 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 24884225 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 24884284 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || || ||||| ||||| || |||| ||| | ||||| Sbjct 24884285 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 24884344 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| || || || |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 24884345 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 24884404 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 || ||||| |||||||| | || || || || ||||| || || ||||| || || Sbjct 24884405 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 24884464 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || ||||||| | || ||| || ||||||||||||| Sbjct 24884465 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 24884524 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 24884525 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 24884584 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || || ||||| |||||||| |||||||| ||||| Sbjct 24884585 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 24884644 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || | |||||| | |||||||| || Sbjct 24884645 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 24884704 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | ||| || | || ||| || || | || ||||||||||| || || ||||| Sbjct 24884705 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 24884764 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||||||||||| ||||| | |||||||| ||||| ||||| || Sbjct 24884765 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 24884824 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | |||||| | | | || | ||||||| |||||||| || Sbjct 24884825 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 24884884 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||||||||||| | ||| ||||||||||| || |||||||| | || || || || Sbjct 24884885 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 24884944 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | |||||| || |||||||| || || ||||| || || || | ||||||| |||||| Sbjct 24884945 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 24885004 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 |||||||||||||| || || || || || |||||||||||||||| || || ||||| Sbjct 24885005 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 24885064 Query 68738 TGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGG 68796 ||||| | ||| || ||||||||||||| || |||||||| || | |||||| ||| Sbjct 24885065 -AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGG 24885122 Query 68797 TTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 || || ||| ||| | ||| | |||||| Sbjct 24885123 TTTTCGGTGCTAGTTATCCAGTTGCAGAA 24885151 Score = 565 bits (626), Expect = 3e-156 Identities = 731/1007 (73%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || |||||||| || | Sbjct 24895041 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 24894982 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 24894981 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 24894922 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 24894921 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 24894862 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| || || | | || || | ||| |||| | ||| | || || | Sbjct 24894861 GTAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTA 24894802 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || | Sbjct 24894801 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGG 24894742 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| ||||| || || || |||||||| ||||||||||| ||||||| | || || | Sbjct 24894741 ACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 24894682 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| ||||| || ||| | ||||| || || || || | |||| Sbjct 24894681 CGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCAT 24894622 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | || | | || || || |||||||||||||| |||| Sbjct 24894621 GAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGT 24894562 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| |||||||| | |||||| | ||||||||| || |||| || | Sbjct 24894561 TCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGC 24894502 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||| ||||| || || || || || || || Sbjct 24894501 CAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAA 24894442 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 ||||||||||||| || |||||||| | ||| ||||| || || || | | || ||| Sbjct 24894441 CAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGAC 24894383 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||||||||| ||||| || |||||||| ||||| || Sbjct 24894382 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCA 24894323 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || |||||||| || | || || Sbjct 24894322 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGG 24894263 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| ||||| | | ||| || | | | || ||||| || || || || || || Sbjct 24894262 CCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTT 24894203 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | ||||| ||| || | ||| | ||| | ||| || || ||||| || ||| Sbjct 24894202 AAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACA 24894143 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || || || || |||| ||| || || | || | ||||||| |||||||| | ||| Sbjct 24894142 AAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGG 24894083 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 |||||||| || ||||| ||||| || || | | | |||||| || Sbjct 24894082 CCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTC 24894036 >seq9 Length=18641908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 67981 TTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGC 68040 || || ||||| ||||| || |||| ||| | ||||||||||| || || || |||||| Sbjct 2646642 TTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 2646583 Query 68041 CATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGAT 68099 || ||||| | ||||||||| | ||||| |||||||| || ||||| |||||||| Sbjct 2646582 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGAT 2646524 >seq8 Length=21838022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 19549448 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 19549505 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 19549506 TCTACCACTGAGCTACTGAGGA 19549527 >seq6 Length=31808207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 685110 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 685167 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 685168 TCTACCACTGAGCTACTGAGGA 685189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 685197 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 685254 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 685255 TCTACCACTGAGCTACTGAGGA 685276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054314191840