Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 8e-14 >seq5 Length=26596109 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | || || || | ||| || ||| || ||||| | | Sbjct 7957994 CCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCT 7958053 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | || || ||||||||||| | ||| ||||| || || Sbjct 7958054 AAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGG-CTGCTGATCCGGGGGA 7958112 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || || || |||||| || || | |||||||| || || Sbjct 7958113 ATGCCCTCCTTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACC 7958172 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||||||||| ||||| ||||| || | ||| || |||||| Sbjct 7958173 TCCAGGGTAATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479848636200