Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq3 497 1e-135 seq9 89.7 6e-13 >seq3 Length=38314702 Score = 497 bits (550), Expect = 1e-135 Identities = 699/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 24885142 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 24885084 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 24885083 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 24885024 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | || || ||||| || ||||| Sbjct 24885023 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 24884964 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 24884963 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 24884904 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 24884903 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 24884844 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 24884843 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 24884784 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 24884783 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 24884724 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || || | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 24884723 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 24884664 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||| ||| | || ||||| ||||| || ||||| || ||||| || || || || Sbjct 24884663 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 24884604 Query 72783 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGT 72842 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 24884603 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 24884544 Query 72843 TACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTT 72902 || || | | ||||| || || || || ||||| || | || || | || Sbjct 24884543 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATT 24884484 Query 72903 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 72962 || ||||| ||||| || ||||| ||||| || |||||||| || || || ||||||| Sbjct 24884483 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 24884424 Query 72963 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 73022 |||||| ||||| || |||||||||||||| |||||||||||| | |||| | || Sbjct 24884423 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 24884364 Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| | | ||||| || | | ||||| |||| ||||| ||||| || ||||| Sbjct 24884363 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 24884304 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 73141 |||||| ||||||||||| || || ||| || || || || | || |||| | Sbjct 24884303 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTG 24884245 Query 73142 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 73201 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 24884244 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 24884185 Query 73202 TCCCACTAGACCTAGC 73217 |||| ||||||||||| Sbjct 24884184 TCCCTCTAGACCTAGC 24884169 Score = 322 bits (356), Expect = 5e-83 Identities = 692/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || |||||||| || || |||| || | | | || | | ||| | || ||||| Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 24894263 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 24894264 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 24894323 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 24894324 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 24894383 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | | || || | ||||| || || Sbjct 24894384 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 24894443 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || || || ||||| | || || |||||||||| || || || || Sbjct 24894444 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 24894503 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 24894504 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 24894563 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 24894564 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 24894623 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || ||||| || | ||||| | | ||| | || ||| ||| Sbjct 24894624 GGGGCAACCGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGT------ 24894665 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 | | || ||| | || || | || || || | ||||| |||||| ||| | Sbjct 24894666 ---GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 24894722 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || ||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 24894723 ACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 24894782 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 24894783 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 24894842 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 24894843 GGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 24894902 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 24894903 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 24894962 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| || || ||||| || ||||| || || | ||||| || || || | ||| Sbjct 24894963 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 24895022 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 24895023 CGTGGAAACGCTCTTTAA 24895040 >seq9 Length=18641908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 72956 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 ||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||| Sbjct 2646519 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 2646578 Query 73016 TATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACC 73075 | |||||||| | | ||||| || | | ||||| |||| ||||| ||||| | Sbjct 2646579 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATC 2646638 Query 73076 TTAA 73079 | || Sbjct 2646639 TAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572873514068960