Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-25 seq1 129 7e-24 seq8 120 4e-21 seq9 111 2e-18 seq11 100 3e-15 seq5 100 3e-15 seq7 98.7 1e-14 >seq3 Length=38314702 Score = 132 bits (146), Expect = 6e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| ||||||||||||||| | | || Sbjct 10387605 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGA 10387546 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCCGATGCGGTCGATC 1254461 | ||| |||||| || | || || ||| ||||||| |||| || |||| Sbjct 10387545 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGCGGCCTCCTGTGC-GAGCTTCTCGAAG 10387487 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||||| |||||| | |||| |||||| || | ||| ||| Sbjct 10387486 ATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATTCCGATGTCCGGG 10387427 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| || |||||| ||||| Sbjct 10387426 TGCACCTGCTTCAGGACCTTGAAGATG 10387400 Score = 93.3 bits (102), Expect = 5e-13 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 1349432 CGGCCAAGGGCGTCGCCTACCTGCAC---GGTCTCGACCCGCCCATCGTGCACCGCGACC 1349488 ||||||||| | |||| ||||||||| | | ||||||||||| ||||||||| Sbjct 7423361 CGGCCAAGGCCATCGCGTACCTGCACTCGGAGGTGCACCCGCCCATCTACCACCGCGACA 7423420 Query 1349489 TCAAGAGCGGCAACCTGCTGGTCGACCAAAACTACAACGTCAAGGTGGCCGACTTTGGCC 1349548 ||||| | ||||| | ||| ||||||| | |||||| |||||| |||||||| || | Sbjct 7423421 TCAAGTCCAGCAACATCCTGCTCGACCACGAGTACAACTCCAAGGTTGCCGACTTCGGGC 7423480 Query 1349549 TGGCGCGCAT 1349558 || |||| || Sbjct 7423481 TGTCGCGGAT 7423490 Score = 87.8 bits (96), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1347607 GTCGTCCACCGCGACCTCAAGTCGCTCAACGTGCTCCTCGACGCCAAGTGGAACGCCAAG 1347666 ||| ||||||||||| |||||||| |||||| |||||||||||||| | |||||||| Sbjct 2983707 GTCATCCACCGCGACGTCAAGTCGAGCAACGTCCTCCTCGACGCCAACATGGACGCCAAG 2983648 Query 1347667 ATCTCAGACTTTGGCCTCACGCAGTGGTCGGCGCGCGCCCGCACG 1347711 ||| | ||||| ||||| ||| ||| |||||| |||||| Sbjct 2983647 ATCGCCGACTTCGGCCT--CGCCCGCGTCATGGCGCGCGCGCACG 2983605 >seq1 Length=41795227 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| || | | || Sbjct 2572790 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGTGAGGTGA 2572849 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || |||| || | ||| |||| ||| |||| | Sbjct 2572850 TGGTGGGCTTCTTGTTGTAGCGCGCGAGCTTGGCGGACTCGCCAGCGAGCTTCTCGAAGA 2572909 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 2572910 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 2572969 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 2572970 GGACCTGCTTGAGCACCTTGAAGATG 2572995 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || ||||| | | || ||||| ||||||||||||||||| || | | || Sbjct 2584833 GCTTGGCGAGCTCGCCTGGGAGGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 2584892 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||| || | || || | ||| ||| | ||| |||| | Sbjct 2584893 TCGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAGA 2584952 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 2584953 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 2585012 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 2585013 GGACCTGCTTGAGCACCTTGAAGATG 2585038 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| ||||||||||||||||| || | | || Sbjct 2610034 GCTTGGCAAGCTCGCCGGGGAGGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 2610093 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | ||| ||| | ||| |||| | Sbjct 2610094 TGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCTCCGGCGAGCTTCTCGAAGA 2610153 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 2610154 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 2610213 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 2610214 GGACCTGCTTGAGCACCTTGAAGATG 2610239 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || |||||||| | ||||||||||||||| | | || Sbjct 34393464 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGA 34393523 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || | || |||||| ||||||| | ||| |||| | Sbjct 34393524 TGGTCGGCTTCTTGTTGTAGCGGGCGAGACGGGCGGCCTCCTGGGCGAGCTTCTCGAAGA 34393583 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||| |||||||||||||| |||||| | ||| |||||| || | ||||| | Sbjct 34393584 TATCGTTGATAAACGAGTTCATGATCGACATGGCCTTCGAGGAGATCCCGATATCGGGAT 34393643 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||| |||||| | ||| Sbjct 34393644 GCACCTGCTTGAGGACCTTGAAAATG 34393669 Score = 123 bits (136), Expect = 3e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| || | |||||||||||| || | | || Sbjct 2591486 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACTGAGGTCTGGATCTCCCGGGAGGTGA 2591545 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||| || | || || | ||| ||| | ||| |||| | Sbjct 2591546 TCGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAGA 2591605 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 2591606 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 2591665 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 2591666 GGACCTGCTTGAGCACCTTGAAGATG 2591691 Score = 123 bits (136), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| ||||||||||| ||| | | || Sbjct 16066037 GCTTGGCGAGCTCACCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTTGCGGGAGGTGA 16066096 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 | ||| |||||| || | || || ||| ||||||| ||| ||| |||| Sbjct 16066097 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGCGGCCTCC-TGCGCGAGCTTCTCGAAG 16066155 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || ||||||||| |||||| | |||| ||||||||| | ||| ||| Sbjct 16066156 ATGTCGTTGATGAAGGAGTTCATGGTCGACATGGCCTTGGAGGAGATGCCGATGTCCGGG 16066215 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| || |||||| ||||| Sbjct 16066216 TGCACCTGCTTCAGGACCTTGAAGATG 16066242 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| || | | || Sbjct 2421994 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGA 2421935 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | ||| ||| | ||| |||| | Sbjct 2421934 TGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCTCCGGCGAGCTTCTCGAAGA 2421875 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 2421874 TGTCATTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 2421815 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 2421814 GAACCTGCTTGAGCACCTTGAAGATG 2421789 Score = 89.7 bits (98), Expect = 6e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 1349427 GTCGGCGGCCAAGGGCGTCGCCTACCTGCACGGTCTCGACCCGCCCATCGTGCACCGCGA 1349486 |||||| ||| | || || | ||||| |||| |||| || ||||||||||||||||| Sbjct 26335284 GTCGGCCGCC--GCGC-TCACGTACCTCCACGCCATCGAGCCACCCATCGTGCACCGCGA 26335228 Query 1349487 CCTCAAGAGCGGCAACCTGCTGGTCGACCAAAACTACAACGTCAAGGTGGCCGACTTTGG 1349546 | |||||| | |||| | || ||||| ||| | |||||||||| ||||||||||| Sbjct 26335227 CGTCAAGACCACCAACATCCTCCTCGACGCCGACTTCCACGTCAAGGTCGCCGACTTTGG 26335168 Query 1349547 CCT 1349549 ||| Sbjct 26335167 CCT 26335165 Score = 87.8 bits (96), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 292398 ATCGAGCCCGACCGCGAGGTGCGCAAGGCCATGAACGACATCAACGCGGCAGCGCGCCAG 292457 |||| |||||| | |||||| ||||||||||||||||||||||| ||||| | | Sbjct 20620815 ATCGTCCCCGACGAGGTGGTGCGGCGCGCCATGAACGACATCAACGCGGCGGCGCGGCTG 20620756 Query 292458 CGCATGGCCGCTCTGGACCGCGCCGAGGCCGACAAG 292493 ||| |||| || ||| |||||||||||||||||| Sbjct 20620755 CGCGTGGCGGCGGCGGAGCGCGCCGAGGCCGACAAG 20620720 >seq8 Length=21838022 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| | | | || Sbjct 18282318 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGA 18282259 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | || || | |||||||| | ||| |||| | Sbjct 18282258 TGGTGGGCTTCTTGTTGTACCTGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGA 18282199 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| |||||| | |||| ||||| || | ||| |||| Sbjct 18282198 TGTCGTTGATGAACGAGTTCATGATCGACATGGCCTTGGATGAGATCCCGATGTCCGGGT 18282139 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 18282138 GCACCTGCTTGAGCACCTTGAAGATG 18282113 >seq9 Length=18641908 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||||||| |||||||| ||||| ||||| ||| || ||||||| || Sbjct 17221806 GCTGCAAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACTGTGGCTGAC 17221747 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 17221746 ATGATCAAGGGGAAGACACCAGAGGAGATCCGCAAGACCTTCAACATCAAG 17221696 >seq11 Length=24454635 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||||||| |||||||| |||| || ||| ||| || | || || || Sbjct 13300789 GCTGCGAACTACCTCAACATCAAGGGGTTGCTGGACCTTACTTGCCAGACAGTTGCTGAC 13300848 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || |||||||||||||||||||| ||||||||| ||| Sbjct 13300849 ATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 13300903 >seq5 Length=26596109 Score = 100 bits (110), Expect = 3e-15 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || || | ||||||||||||||| | | || Sbjct 20367385 GCTTGGCGAGCTCGCCGGGGAGGACGAGACGAACAGAGGTCTGGATCTCGCGGGAGGTGA 20367326 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 | ||| |||||| | || || | | ||||||| ||| ||| |||| Sbjct 20367325 TGGTGGGCTTCTTGTTGTACCTGGCAAGCCTGGCGGCCTCC-TGCGCGAGCTTCTCGAAA 20367267 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || || ||||||| ||||| | |||| |||||| || | ||| || Sbjct 20367266 ATGTCGTTGATGAAGGAATTCATGATGGACATGGCCTTGGAGGAGATCCCTATGTCTGGA 20367207 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||||||||||| ||||| Sbjct 20367206 TACACCTGCTTGAGCACCTTGAAGATG 20367180 >seq7 Length=26849004 Score = 98.7 bits (108), Expect = 1e-14 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTTTGCGACG---TCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGC 1592187 ||||||| | || || ||||| | || ||| | ||||||| || | ||| || Sbjct 22417221 GTGGGACGAAGACTTCGTCGACGAGCTGGACCAGGACGCCCTCTTCGATGTCATCGCGGC 22417280 Query 1592188 CGCCAACTACCTCGACATCAA--GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||||||||||| | ||||| ||| | || |||||| || ||| || Sbjct 22417281 CGCCAACTACCTCGACATCGATGGCCTC--CTCAACCTCACCTGCAAGAGGGTCGCCGAC 22417338 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 | ||||||||||||| | |||||||||||||||||| || |||||| Sbjct 22417339 ACGATCAAGGGCAAGACCCCCGAGGAGATCCGCAAGGAGTTCAACATC 22417386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138215223804