Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 >seq3 Length=38314702 Score = 102 bits (112), Expect = 1e-16 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 194197 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 194255 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || || || Sbjct 25662940 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGAGA 25662998 Query 194256 TAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 194314 ||| ||| || || |||| ||| ||||||||| || |||| |||| ||||||| | Sbjct 25662999 TAAGTTTAGTAGTAGGCATGG-TCAGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 25663057 Query 194315 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTC 194374 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 25663058 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 25663117 Query 194375 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 194421 | ||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 25663118 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 25663164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489505126560