Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 102 7e-17 seq6 86.0 5e-12 seq2 82.4 6e-11 >seq5 Length=26596109 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || || || ||||||||||||||| | || ||| | Sbjct 7958220 AATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 7958161 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | |||||| |||||| ||||| || ||| | ||| |||||| Sbjct 7958160 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 7958101 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || | ||| || || ||||| ||||||| | | || | || |||||||| Sbjct 7958100 GCAGCC-CTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 7958042 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || || || || |||||| ||||| Sbjct 7958041 CATCCAGAACGAGTCCACCTTGCACCTGGTG 7958011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || || ||||| ||| | || ||||| || |||||| | || ||| || Sbjct 22858026 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 22858085 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| ||| | Sbjct 22858086 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 22858144 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || ||||| ||||||||||||| | | || | || || |||| Sbjct 22858145 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 22858204 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| || || ||||| | ||| ||||| Sbjct 22858205 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 22858236 >seq6 Length=31808207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| | | Sbjct 29029172 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 29029231 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 29029232 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 29029291 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 29029292 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTTGCGGATTACAAC 29029351 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || || || | ||| ||||| Sbjct 29029352 ATCCAAAAGGAGTCCACACTCCACTTGGTG 29029381 >seq2 Length=37273066 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || ||| | |||||||| ||||| ||| |||| |||| || Sbjct 4567984 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 4567925 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 4567924 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 4567865 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| ||| || | || || |||||| Sbjct 4567864 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 4567805 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| | ||| Sbjct 4567804 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 4567775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916