Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq2 86.0 5e-12 seq6 82.4 6e-11 >seq5 Length=26596109 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| ||||| ||| | || ||||| || |||||| | || ||| ||| Sbjct 22858026 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 22858085 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| ||||| || ||| | ||| ||| | Sbjct 22858086 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 22858144 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || ||||| ||||||||||| | | || | || ||||||| Sbjct 22858145 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 22858204 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| ||||||||||| | ||| ||||| Sbjct 22858205 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 22858236 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| || || || ||||||||||||||| | || ||| | Sbjct 7958220 AATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 7958161 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | |||||| ||||||| || || || ||| | ||| |||||| Sbjct 7958160 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 7958101 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || || | ||| || || ||||| ||||| | | || | || || ||||| Sbjct 7958100 GCAG-CCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 7958042 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || ||||| || |||||| ||||| Sbjct 7958041 CATCCAGAACGAGTCCACCTTGCACCTGGTG 7958011 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| ||||||||| |||| ||| ||| Sbjct 22858255 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAGGTTGAGAGCTC- 22858313 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || ||||| | ||| || || Sbjct 22858314 CGACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCA 22858373 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || |||||||| || | | || | || |||||||| Sbjct 22858374 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAA 22858433 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| ||||| Sbjct 22858434 CATTCAGAAGGAGTCCACCCTCCACCTGGTG 22858464 >seq2 Length=37273066 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||| | || ||||| ||||| ||| |||| |||| || Sbjct 4567984 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 4567925 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 4567924 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 4567865 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | || || | || ||||||||| Sbjct 4567864 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 4567805 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 4567804 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 4567775 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||| || || ||| |||| |||| || Sbjct 4568440 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 4568381 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 4568380 GACACCATTGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCGGACCAG 4568321 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||||||||||| || || | || ||||||||| Sbjct 4568320 CAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 4568261 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 4568260 ATCCAGAAGGAGTCGAC 4568244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| || || ||| | || |||| || Sbjct 4568212 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 4568153 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 4568152 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 4568093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||| ||||||| || || | || ||||||||| Sbjct 4568092 CAGCGTCTCATTTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGACTACAAC 4568033 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 4568032 ATCCAGAAGGAGTCGACGCTCCAC 4568009 >seq6 Length=31808207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| | | Sbjct 29029172 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 29029231 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 29029232 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 29029291 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || | ||||| |||||| Sbjct 29029292 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTTGCGGATTACAAC 29029351 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| ||||| Sbjct 29029352 ATCCAAAAGGAGTCCACACTCCACTTGGTG 29029381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876741664268