Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 122 7e-23 seq6 100 2e-16 seq4 100 2e-16 >seq5 Length=26596109 Score = 122 bits (134), Expect = 7e-23 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | ||||| || || || ||||| ||||| || | |||||| Sbjct 7958005 ACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 7958064 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| | |||||||||| ||||| ||||| || Sbjct 7958065 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGGCT-GCTGATCCGGGGGAATGCCCTCCTT 7958123 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 7958124 GTCCTG-AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 7958182 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||||||||| || || || ||||| || |||||| Sbjct 7958183 TGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || | || | || || ||||| ||||| |||||||| ||||| || Sbjct 7958676 TCCTCCCCTGAGGCGATGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGC 7958735 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || ||||| ||||| ||| | || | | ||||| || || || Sbjct 7958736 GAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 7958795 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || ||| || | |||||| | || | |||||||| || | Sbjct 7958796 AATACCCTCCTTGTCCTG-AATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAA 7958854 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || |||||||| | || || ||||| |||||||| Sbjct 7958855 CCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7958903 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| | ||||| | ||||| ||||| ||||| |||||||| || ||||| Sbjct 7958449 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCC 7958508 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || |||||||| | || | | ||||| || || ||| Sbjct 7958509 AAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGA 7958568 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| || || || | ||| || || | || | ||||| || || || Sbjct 7958569 ATACCCTCCTTATCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAGGACTCAACC 7958628 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || || || || ||||| || ||||| ||||||||| Sbjct 7958629 TCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 7958676 >seq6 Length=31808207 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 26573011 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 26572952 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 26572951 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 26572892 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 26572891 AATACCCTCTTTGTCCTG 26572874 >seq4 Length=30391017 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| ||||| |||| ||||||| | Sbjct 26505056 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCA 26504997 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | || | | ||||| || || ||||||||||| ||| Sbjct 26504996 TCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 26504937 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || | || || Sbjct 26504936 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATC 26504877 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || || || |||||||| Sbjct 26504876 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 26504842 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || || ||| Sbjct 26504582 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTACCA 26504523 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 ||| | || | | |||||| ||||| || || ||||| ||||| || ||| || | || Sbjct 26504522 GCAAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 26504464 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || ||||| || || || | || || || |||||||| | ||| Sbjct 26504463 CACATTGTCAATCGTATCAGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 26504404 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 26504403 CTTAACGAATATCTGCAT 26504386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692