Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq3 574 5e-159
>seq3
Length=38314702
Score = 574 bits (636), Expect = 5e-159
Identities = 724/989 (73%), Gaps = 4/989 (0%)
Strand=Plus/Minus
Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110
|||||| | ||| ||||| |||| | |||||| | || | || ||||||||||| |
Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092
Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169
||||| || || || | | |||||| |||| || ||| | || ||| | || || ||
Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033
Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229
||| || ||||| || |||||||| || || ||| |||||||| | | || || |||||
Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973
Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289
|| ||||||||||| || ||||| |||| || ||||| | ||||| ||||| ||
Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913
Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349
|||||||| ||||| ||||||||||| | ||||| || ||||||| | || | ||
Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853
Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409
| |||||| | | || | | |||||||| |||||||||||||| || |||
Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793
Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469
| | |||||||| || ||||| |||||| || || || || || || ||||| | |||
Sbjct 24884792 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 24884733
Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529
|| ||| | | || ||| | |||||||| |||||| |||| ||||||| | || ||
Sbjct 24884732 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 24884673
Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589
||||||||||| |||| |||| | || |||||||||||||| || || |||||||||||
Sbjct 24884672 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 24884613
Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649
|| |||||| | || || ||||| |||||||| || || | ||| ||||||||| ||
Sbjct 24884612 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 24884553
Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATG 157708
| || || || | | ||| || | ||||| ||||||| || || || | |
Sbjct 24884552 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGG 24884494
Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768
|||||| || |||||||| |||||||| || || || || || || || ||||| || |
Sbjct 24884493 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 24884434
Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828
| || | ||||||||||| ||| || |||||| | | | ||||||||| | |
Sbjct 24884433 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 24884374
Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 157888
| || |||||||| || || || ||||||||||| | || | || || ||||| ||||
Sbjct 24884373 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 24884314
Query 157889 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 157948
| || ||||| ||||| |||||||| || | ||||| | || ||||| || | || |
Sbjct 24884313 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 24884254
Query 157949 CCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158008
| ||||| ||| || | ||||| ||| ||||||||||||||| ||||| || ||||| |
Sbjct 24884253 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 24884194
Query 158009 CACACAACTTCCCACTGGATCTTGCTGCT 158037
| ||||||||||| || || || ||||||
Sbjct 24884193 CTCACAACTTCCCTCTAGACCTAGCTGCT 24884165
Score = 571 bits (632), Expect = 6e-158
Identities = 738/1013 (73%), Gaps = 6/1013 (1%)
Strand=Plus/Plus
Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834
||||| || | ||||||||| | | |||| ||||| |||||||| || ||||||||
Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083
Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894
|| | ||| | || ||||||| | ||| | || |||||| |||| || || |||||
Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143
Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGT-GCAAACTTTCT 158953
| || |||||||| |||||| | || | ||||||| | || ||| |||| |||||
Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 24894201
Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012
|| | ||||||||||| || || || || | | | || ||| | |||| || ||||
Sbjct 24894202 TAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 24894261
Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072
| || || || ||||||||||| | ||| ||| | || || || |||| |||||
Sbjct 24894262 GCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 24894321
Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 159132
| || ||||| || || ||||| ||||| ||||||||| | || || |||||||| || |
Sbjct 24894322 TTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 24894381
Query 159133 G-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159191
| ||| || | | || || || ||||| ||| | |||||||| || || |||||||||
Sbjct 24894382 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 24894440
Query 159192 GTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 159251
|| ||| ||||| || || ||||| || || ||| ||||||| || || ||| |||
Sbjct 24894441 GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTT 24894500
Query 159252 GGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTA 159311
|| || || || ||||| | ||| | |||||| | ||||| || || |||||||| |
Sbjct 24894501 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 24894560
Query 159312 AACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATT 159371
||||| || ||||||||||||||||| || | |||| | || || |||| ||||||
Sbjct 24894561 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 24894620
Query 159372 CATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 159431
||||||| || || ||||| || ||| ||||| || || ||||| |||||
Sbjct 24894621 CATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 24894680
Query 159432 GCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 159491
|| ||| | ||||||||| || || |||||||| |||||||| || || ||||| |||
Sbjct 24894681 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGG 24894740
Query 159492 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551
|| || ||||| || |||| ||||| || || || ||| | |||||||||||| | |||
Sbjct 24894741 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 24894800
Query 159552 GTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 159611
|| || || | ||| |||||| ||||||| | | || || ||||| || ||
Sbjct 24894801 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTA 24894860
Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671
||||| || || ||||| || || ||| | ||||| |||||||| |||||||| ||
Sbjct 24894861 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 24894920
Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731
||||||||||| || |||||| | || || || | ||||| ||| ||||| || |||
Sbjct 24894921 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 24894980
Query 159732 CAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784
|| || |||||||| | || ||||| || || ||||||||| | || |||||
Sbjct 24894981 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 24895033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545273518208960
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