Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 239 3e-57 seq12 105 5e-17 seq2 98.7 7e-15 seq8 86.0 5e-11 >seq3 Length=38314702 Score = 239 bits (264), Expect = 3e-57 Identities = 700/1065 (66%), Gaps = 24/1065 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| |||||| |||||||| ||||| || | ||||| ||| || ||||||| Sbjct 36568845 CGGCAGACACATTCAGAATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 36568786 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 36568785 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 36568726 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | | |||||||| | | || || || ||| || ||||| || | Sbjct 36568725 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCAGAGT 36568666 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | || || ||| || || |||||| || ||||| || || | Sbjct 36568665 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 36568607 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | | Sbjct 36568606 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 36568547 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || |||| | ||| ||| ||||| || || | |||||||| Sbjct 36568546 AGATCCTGCACCTTCTCATTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 36568487 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||| |||||||||||||| |||| | || || |||| || |||||||| |||| Sbjct 36568486 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAAT 36568429 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||||| || ||| |||| || | || ||| || || || | |||| |||| Sbjct 36568428 CCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCTACAAGGACAACATCAT 36568369 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACC 281958 | || ||| | || |||| |||| |||| | |||| | || || | || | | Sbjct 36568368 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATG--C 36568312 Query 281959 AGCTC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 | || | || | ||| ||| || || || | ||||| || | ||| || Sbjct 36568311 ATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATAGA 36568252 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 36568251 AATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGG 36568192 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATT 282135 | || || | |||||||| ||| || || || | || || | | | || | | Sbjct 36568191 TCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACT 36568134 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | ||| | |||| ||||||||||| |||| ||| | | || || || || || Sbjct 36568133 GATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTC 36568074 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || || || || | | ||| | || | || ||| | || | |||| || || Sbjct 36568073 AAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTC 36568014 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | || | |||||| || |||||||| | |||||||| || || || Sbjct 36568013 CTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTT 36567954 Query 282316 CATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | | || | ||| || || ||||||||||| |||| |||||||| |||| Sbjct 36567953 CTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTG 36567895 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | || |||||||||||| ||||| || ||||||||||| || | Sbjct 36567894 GCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCT 36567835 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || ||||| || || |||||||||||||| | ||| |||| Sbjct 36567834 GCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 36567790 >seq12 Length=19964954 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 5071800 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 5071747 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 5071746 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 5071687 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || |||||||| || || |||||| Sbjct 5071686 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAATCATTGAAGTATGCA 5071627 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 5071626 GGAACAGTAA 5071617 >seq2 Length=37273066 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 34031476 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 34031535 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 34031536 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 34031595 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 34031596 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 34031629 >seq8 Length=21838022 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 18948573 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 18948514 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 18948513 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 18948454 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 18948453 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 18948394 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || ||||| | ||| || || |||||||| || Sbjct 18948393 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 18948355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629810850712