Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 120 7e-22 seq4 105 2e-17 seq6 95.1 3e-14 seq2 93.3 1e-13 seq3 89.7 1e-12 seq1 89.7 1e-12 >seq5 Length=26596109 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || ||||||||||| || || || ||| Sbjct 7958672 CAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTTTGGAGGTTGAGTCCTCAGAC 7958613 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| || ||| || Sbjct 7958612 ACGATTGACAACGTGAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCAGCAG 7958553 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| |||| ||||| || |||||| | Sbjct 7958552 CGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGGACCTTGGCGGACTACAACATT 7958493 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||||||||| Sbjct 7958492 CAGAAAGAGTCCACTCTTCACCTTGT 7958467 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| ||||||||||| | || ||||| ||||| |||| ||||| || Sbjct 7958467 ACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTCCGACCATCCTCA 7958526 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || ||||||||||| || || || Sbjct 7958527 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTG 7958558 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || || | || || || |||||| Sbjct 7958444 CAGATTTTTGTCAAGACCCTGACCGGAAAGACTATTACGCTTGAGGTCGAGTCTTCTGAT 7958385 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || || |||||| || Sbjct 7958384 ACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 7958325 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || ||| | || |||| || ||||| || Sbjct 7958324 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACCCTGGCTGACTACAATATC 7958265 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| | |||||||| || Sbjct 7958264 CAGAAGGAGTCGATCCTTCACCTAGT 7958239 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||| | || ||||| |||||| Sbjct 22857574 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAT 22857633 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| |||||| || Sbjct 22857634 ACCATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAGCAG 22857693 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| ||||| | || || |||||| || Sbjct 22857694 CGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATC 22857753 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 22857754 CAGAAGGAGTCCACCCTTCACCTTGT 22857779 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 3748445 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 3748504 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 3748505 GTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 3748564 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 3748565 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 3748624 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 3748625 ACCCTCCACCTCGT 3748638 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || |||||| ||||| || ||||| ||||||| || ||||| || | ||||| ||||| Sbjct 22858011 CAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTGCCATC 22857952 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || |||||||| || | ||| || Sbjct 22857951 CTCCAGCTGCTTGCCAGCGAAGATGAGTCTTTGCTG 22857916 >seq4 Length=30391017 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| ||||| || || |||||||| |||| Sbjct 26504857 AAGACCCTCACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAAT 26504916 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || | || |||||| Sbjct 26504917 GTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTC 26504976 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | || ||||||||| ||||||| ||||| Sbjct 26504977 GCCGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCC 26505036 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| || | ||||| Sbjct 26505037 ACCCTGCACCTTGTCCTGCGCCTTCG 26505062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| |||| || || |||||||| |||| Sbjct 26505085 AAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAAC 26505144 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || | || |||||| Sbjct 26505145 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTC 26505204 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| || ||| ||||||| ||||| Sbjct 26505205 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCC 26505264 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 26505265 ACCCTGCACCTTGT 26505278 >seq6 Length=31808207 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || ||||| | || || || || ||| Sbjct 29028947 CAGATCTTCGTCAAGACCCTGACCGGAAAGACCATCACGCTTGAGGTCGAGTCCTCAGAC 29029006 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 29029007 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 29029066 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || ||||| || |||||| || Sbjct 29029067 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCTTGGCTGACTACAACATC 29029126 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || |||||||| ||| | || || Sbjct 29029127 CAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCT 29029161 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||| | || || || || ||| Sbjct 28434973 CAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCGGAC 28434914 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || || ||| || Sbjct 28434913 ACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAGCAG 28434854 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | || || | |||| |||| ||||||||| | Sbjct 28434853 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAACATT 28434794 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||||||||| Sbjct 28434793 CAGAAAGAGTCCACTCTTCACCTTGT 28434768 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || || || | || || || |||| | Sbjct 28434745 CAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTCTCAT 28434686 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| |||||| || Sbjct 28434685 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 28434626 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| | || |||||| | || |||| ||||||||| || Sbjct 28434625 CGCTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGGCAGATTACAACATC 28434566 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || | ||||| || Sbjct 28434565 CAGAAGGAGTCCACCTTGCACCTGGT 28434540 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || || || ||||| Sbjct 28435201 CAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGAT 28435142 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 28435141 ACAATTGACGATGTGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAGCAA 28435082 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| | || ||||| | || | || ||||||||| || Sbjct 28435081 CGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATC 28435022 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 28435021 CAGAAGGAGTCCACCCTCCACCTTGT 28434996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || || | ||| |||||||| || ||||| ||||||| || ||||||||||| || | Sbjct 29029161 AGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 29029102 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || || ||||||||||| ||||||||||| || || || || Sbjct 29029101 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG 29029061 >seq2 Length=37273066 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | || ||||| ||||||| Sbjct 4568437 CAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCTGAC 4568378 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || || |||||| || Sbjct 4568377 ACCATTGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCGGACCAGCAG 4568318 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| |||| || || ||||| | || || |||||| || Sbjct 4568317 CGTCTCATTTTCGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAACATC 4568258 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 4568257 CAGAAGGAGTCGACCCTTCACCTTGT 4568232 >seq3 Length=38314702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||| || ||| Sbjct 7991491 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCC 7991550 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||||||||| || || Sbjct 7991551 AGCTGCTTCCCGGCGAAGATAAGCCGCTGCTG 7991582 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 ||||||| || | || ||||||||||| |||||| |||| ||||| | || |||| Sbjct 9370142 GCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGC 9370201 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| |||||| ||||||| ||||| || |||||||| || Sbjct 9370202 CGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGT 9370240 >seq1 Length=41795227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 11039376 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 11039317 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || |||||| Sbjct 11039316 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 11039257 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 11039256 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 11039197 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 11039196 ACCCTCCACCTGGT 11039183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820618295052