Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3 589 6e-164 seq9 111 5e-20 >seq3 Length=38314702 Score = 589 bits (652), Expect = 6e-164 Identities = 728/984 (74%), Gaps = 14/984 (1%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 24885145 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 24885086 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 24885085 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 24885027 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | ||||| |||||||| || || Sbjct 24885026 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 24884967 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 24884966 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 24884909 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 24884908 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 24884849 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || ||||||||||| || | || || Sbjct 24884848 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 24884789 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 24884788 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 24884730 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | ||||| ||||||| || || ||||| |||| ||||||||| || || || Sbjct 24884729 TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 24884670 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || |||||||| || ||||| || || Sbjct 24884669 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATT 24884610 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 24884609 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 24884550 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGG 20163 | || || || | | ||| | | || || |||||| | ||| || | || | || Sbjct 24884549 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAA--TCCGCTAATGAGGG 24884493 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| ||||| Sbjct 24884492 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 24884433 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | || Sbjct 24884432 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 24884373 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| ||||| || ||||||||||||||| |||| || || || ||| ||||| || || Sbjct 24884372 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 24884313 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 ||| ||||| ||||| || ||||| || | | || | | | ||||| || ||| |||| Sbjct 24884312 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 24884253 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| || |||| ||||||||||| || | || || ||||| ||||| ||||| Sbjct 24884252 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 24884193 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 ||| |||||||| || ||||| || Sbjct 24884192 TCACAACTTCCCTCTAGACCTAGC 24884169 >seq9 Length=18641908 Score = 111 bits (122), Expect = 5e-20 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20216 TACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTC 20275 || ||||| || || ||||||||||| ||| ||| ||||| |||||| |||||||| Sbjct 2646509 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTC 2646568 Query 20276 TTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATG 20335 ||| | ||||| ||||| || ||||||||||||||| |||| || || || ||| ||| Sbjct 2646569 TTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATG 2646628 Query 20336 GCGTTTAATCTGAA 20349 || || ||||| || Sbjct 2646629 GCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828778791896