Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-32 seq1 149 9e-30 seq8 145 1e-28 seq5 125 1e-22 >seq3 Length=38314702 Score = 158 bits (174), Expect = 2e-32 Identities = 178/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||||||||| || | | || |||||||| | || Sbjct 10387401 ATCTTCAAGGTCCTGAAGCAGGTGCACCCG-GA--CATCGGAATCTCCTCCAA---GGCC 10387454 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGG 725029 ||||||||||||||||| || |||||||||| |||| ||| ||| | |||||| Sbjct 10387455 ATGTCGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCG-CACAGGAGGCCGC 10387513 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| || |||| ||||||| ||| ||| | | ||||||||||||||| |||| Sbjct 10387514 CCGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGT 10387573 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 10387574 CCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 10387626 >seq1 Length=41795227 Score = 149 bits (164), Expect = 9e-30 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| ||| |||| || Sbjct 2572994 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 2572941 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| |||| ||| Sbjct 2572940 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCTGGCGAGTCCGCC 2572881 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 2572880 AAGCTCGCGCGCTACAACAAGAAGCCCACCATCACCTCACGGGAGATCCAGACCTCCGTC 2572821 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 2572820 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 2572769 Score = 149 bits (164), Expect = 9e-30 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| ||| |||| || Sbjct 2585037 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 2584984 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | ||| ||| Sbjct 2584983 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCCGCC 2584924 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||||||| | | || ||||||||||||||||| Sbjct 2584923 AAGCTCGCCCGCTACAACAAGAAGCCCACGATCACCTCCCGGGAGATCCAGACCGCCGTC 2584864 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| || |||| ||||||||||||||||||||||| Sbjct 2584863 CGCCTCGTCCTCCCAGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 2584812 Score = 149 bits (164), Expect = 9e-30 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| ||| |||| || Sbjct 2610238 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 2610185 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | ||| ||| Sbjct 2610184 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGAGAGTCCGCC 2610125 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 2610124 AAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 2610065 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 2610064 CGCCTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCCGAGGGCACCA 2610013 Score = 149 bits (164), Expect = 9e-30 Identities = 177/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||||||||| || | | || |||| ||| |||| || Sbjct 16066241 ATCTTCAAGGTCCTGAAGCAGGTGCACCCG-GA--CATCGG--CATC-TCCTCCAAGGCC 16066188 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||||||| ||||||||| || |||||||||| |||| ||| ||| ||||||| Sbjct 16066187 ATGTCGACCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCCGC 16066129 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| || |||| ||||||| ||| ||| | | ||| ||||||||||| |||| Sbjct 16066128 CCGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCAAGATCCAGACCTCCGT 16066069 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||| || || |||| ||||||||||||||||||||||| Sbjct 16066068 CCGCCTCGTCCTCCCCGGTGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 16066016 Score = 145 bits (160), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| |||||||||||||| ||| | || || ||||| || | ||||||| Sbjct 34393663 CAAGGTCCTCAAGCAGGTGCATCCCGATATCG---GGATCTCCTCGAA---GGCCATGTC 34393610 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||||||||||||||| ||||||| || |||| ||| | ||||||| || || Sbjct 34393609 GATCATGAACTCGTTTATCAACGATATCTTCGAGAAGCTCGCCCAGGAGGCCGCCCGTCT 34393550 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 || |||| ||||||| || ||| | | ||||||||||||||| | |||||||| Sbjct 34393549 CGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGCGAGATCCAGACCTCGGTGCGCCT 34393490 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | |||||| || |||| |||||||||||| |||||||||| Sbjct 34393489 CGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 34393443 Score = 140 bits (154), Expect = 5e-27 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| ||| |||| || Sbjct 2591690 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 2591637 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||||||||| |||| ||| | ||| ||| Sbjct 2591636 ATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCCGCC 2591577 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||||||| | | || |||||||||||| | || Sbjct 2591576 AAGCTCGCCCGCTACAACAAGAAGCCCACGATCACCTCCCGGGAGATCCAGACCTCAGTC 2591517 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||||||||| |||||||||| Sbjct 2591516 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 2591465 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| ||| |||| || Sbjct 2421790 ATCTTCAAGGTGCTCAAGCAGGTTCACCCC-GA--CATCGG--CATC-TCCTCCAAGGCC 2421843 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || |||| ||||| |||| ||| | ||| ||| Sbjct 2421844 ATGTCCATCATGAACTCCTTCATCAATGACATCTTCGAGAAGCTCGCCGGAGAGTCCGCC 2421903 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 2421904 AAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTC 2421963 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||||||||| |||||||||| Sbjct 2421964 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 2422015 Score = 104 bits (114), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 724993 TCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC 725052 |||||||||| |||| ||| | ||||||||| || || |||| ||||||| Sbjct 2630922 TCAACGACATCTTCGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCGCCCGCTACAACAAGA 2630981 Query 725053 GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAAC 725112 ||| ||| | | ||||||||||||||| |||| ||||| || | | |||||| | Sbjct 2630982 AGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGC 2631041 Query 725113 TGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | |||| ||||||||||||||||||||||| Sbjct 2631042 TCGCCAAGCACGCCGTCTCCGAGGGCACCA 2631071 Score = 93.3 bits (102), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || |||| ||||||| ||| ||| | | || ||||||||||||||||| ||| Sbjct 2603705 CTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGC 2603646 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 2603645 CTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCCGAGGGCACCA 2603597 >seq8 Length=21838022 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||||||||| || | | ||| || ||||| | || Sbjct 18282114 ATCTTCAAGGTGCTCAAGCAGGTGCACCCG-GA--CATCGGGATCTCATCCAA---GGCC 18282167 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| |||||||||| |||| ||| | |||||||| Sbjct 18282168 ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCC 18282227 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | | ||||||| ||| ||| | | | |||||||||||| |||| Sbjct 18282228 AAGCTCGCCAGGTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCCGTC 18282287 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 18282288 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 18282339 >seq5 Length=26596109 Score = 125 bits (138), Expect = 1e-22 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||| | || || | | ||| |||||||| | || Sbjct 20367181 ATCTTCAAGGTGCTCAAGCAGGTGTATCCA-GA--CATAGGGATCTCCTCCAA---GGCC 20367234 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||||| |||||||| || || |||||||||| |||| ||| ||| ||||||| Sbjct 20367235 ATGTCCATCATGAATTCCTTCATCAACGACATTTTCGAGAAGCTCGCGCAG-GAGGCCGC 20367293 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | || || | | ||||||| ||| ||| | | ||||||||||||||| | || Sbjct 20367294 CAGGCTTGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCTGT 20367353 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 20367354 TCGTCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 20367406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810042577944