Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3 580 1e-160 seq9 98.7 1e-15 >seq3 Length=38314702 Score = 580 bits (642), Expect = 1e-160 Identities = 725/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | || ||| | || || || Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | || |||||||| Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || || ||||||| | || | || Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 24884792 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 24884733 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | || ||| | |||||||| ||||||||||| ||||||| | || || Sbjct 24884732 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 24884673 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||| |||| ||| |||||||||| ||||| || |||||||||||||| || Sbjct 24884672 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 24884613 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 24884612 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 24884553 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || || | | ||| || | ||||| ||||| | || || || | | Sbjct 24884552 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGG 24884494 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | || || ||||| |||||||| ||||| || || || || ||||| || || | Sbjct 24884493 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 24884434 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || || |||||||||||||| ||||||||||| || ||||| ||||||||| | | Sbjct 24884433 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 24884374 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || || |||||||||||| | || | || ||||| |||| Sbjct 24884373 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 24884314 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 | || ||||| ||||| |||||||| || | |||| | ||||| || || |||| | Sbjct 24884313 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 24884254 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | | ||||||||||| ||||| || ||||| | Sbjct 24884253 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 24884194 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | ||||||||||| || ||||| |||||| Sbjct 24884193 CTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 567 bits (628), Expect = 9e-157 Identities = 728/1001 (73%), Gaps = 2/1001 (0%) Strand=Plus/Plus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 24894034 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 24894093 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || || Sbjct 24894094 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 24894153 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 180209 |||| ||||| || | || ||||||| | |||||| || |||||| || ||||| Sbjct 24894154 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 24894212 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || ||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 24894213 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 24894272 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 24894273 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 24894332 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGT 180389 || || || || ||||| || || ||| |||| || |||||||| || || | || Sbjct 24894333 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 24894392 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| ||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct 24894393 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 24894452 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 || || || |||||||| || ||| ||||||||||||| || |||||| |||||||| Sbjct 24894453 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 24894512 Query 180510 ATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 || ||| ||||| | ||||| | || || || || || ||||| | ||||| || ||| Sbjct 24894513 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 24894572 Query 180570 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACT 180629 |||||||||||||| || || |||| | || |||||| || || ||||| | ||| Sbjct 24894573 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 24894632 Query 180630 GTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCA 180689 ||||| ||||| || | ||| || || || ||||| ||||| || ||| | || Sbjct 24894633 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 24894692 Query 180690 ACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 180749 || |||| || |||||||| || |||||||| || || ||||| ||||| || ||||| Sbjct 24894693 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 24894752 Query 180750 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180809 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 24894753 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 24894812 Query 180810 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180869 ||| |||||| |||||||| | | || || ||||| ||||| ||||| || || Sbjct 24894813 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 24894872 Query 180870 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAG 180929 ||||| || || ||| | ||||| ||||||||||| || ||||| ||||||||||| Sbjct 24894873 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 24894932 Query 180930 AACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAA 180989 || || || || || || || | ||||| ||| ||||| || ||||| || || ||| Sbjct 24894933 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 24894992 Query 180990 AACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || | || |||||||| || ||||||||| | || ||||| Sbjct 24894993 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 24895033 >seq9 Length=18641908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 179572 TACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTC 179631 || || || || || |||||||||||||| ||||||||||| || ||||| |||||| Sbjct 2646509 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTC 2646568 Query 179632 TTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATG 179691 ||| | ||||| ||||| || || || || |||||||||||| | || | || ||| Sbjct 2646569 TTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATG 2646628 Query 179692 GCGTTCAACCTCAA 179705 || ||||| || || Sbjct 2646629 GCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329508450560