Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 107 3e-18 seq2 96.9 5e-15 >seq6 Length=31808207 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 4541549 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 4541608 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||| || || | || |||||||| || || Sbjct 4541609 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 4541668 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 4541669 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 4541728 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 4541729 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4541770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/116 (77%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 || || | ||||||||| || ||||| ||||| || || || || || ||| ||||||| Sbjct 4539957 ATGAAAGTATCTGCCAACCCTTGAACACCAATGCCAATTGGCCTGTGCCTCATATTTGAT 4540016 Query 69145 CTTT---CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| ||| ||| || ||| |||||||||||||| || ||||| || ||||| Sbjct 4540017 CTTTTTGCAGTTTC---AACAGGGTAATAATTAATATCAATTATTTTGTTGAGATT 4540069 >seq2 Length=37273066 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 35540147 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCC 35540088 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || | || | |||||| ||| || Sbjct 35540087 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGA 35540028 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 ||||| ||||| || || ||||| | ||| |||||| | | || |||| Sbjct 35540027 GAGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCAT 35539972 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||||||||| ||||| | || || |||||| Sbjct 35539971 AAATGCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 35539925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680