Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq5 100 2e-16 seq2 84.2 2e-11 >seq6 Length=31808207 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| |||| || ||||| || ||| Sbjct 29029140 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCG 29029081 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | |||||| || || ||||||| ||| Sbjct 29029080 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 29029021 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| || || || || || || || | || || ||||| || Sbjct 29029020 ACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTTCCGGTCAGGGTC 29028961 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 29028960 TTGACGAAGATCTGCATA 29028943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 29028410 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 29028351 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 29028350 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 29028291 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 29028290 ACATTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 29028231 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 29028230 TTCACAAAGATCTGCAT 29028214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || ||||| || || Sbjct 29028912 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCA 29028853 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 29028852 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 29028793 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| ||||| || Sbjct 29028792 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTC 29028733 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 29028732 TTGACGAAGATCTGCATACCT 29028712 >seq5 Length=26596109 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | ||||| | ||||||||||| || || Sbjct 22857539 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 22857480 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 22857479 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 22857420 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || ||||| || || ||||| | ||||| || ||||| Sbjct 22857419 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 22857360 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTAT 27264 ||||||||||| ||||| |||| || ||| ||| Sbjct 22857359 TTCACAAAGATCTGCAT--CTGC-AAGAATGTAT 22857329 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| |||||||| || | | || | || || ||||| || || Sbjct 7958479 GTGGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTCCGACCATCCTCAAGCTGCTTGCCA 7958538 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | |||||| ||||| |||||| ||| Sbjct 7958539 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGGATCTTTGCCTTC 7958598 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| || ||||| || | ||| || | || || |||| || Sbjct 7958599 ACGTTGTCAATCGTGTCTGAGGACTCAACCTCCAAAGTGATGGTCTTTCCTGTCAAGGTC 7958658 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 7958659 TTCACAAAGATCTGCAT 7958675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||| || | | |||| |||| || || || || || Sbjct 7958707 GTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCC 7958766 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | |||||| || || |||||| || Sbjct 7958767 GCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 7958826 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| ||||| ||||| | ||||| || || || Sbjct 7958827 ACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTC 7958886 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 7958887 TTCACAAAGATCTGCAT 7958903 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GC 27078 ||| ||||| | || | |||| || || || || || || || || ||||| || || Sbjct 7957993 GCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGC 7958052 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||| | || |||||||| || || || | || || |||| |||||||| | Sbjct 7958053 TAAGGT-GCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGG-GCTGCTGATCCGGGG 7958110 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| ||| | | | || | ||||||| | |||| Sbjct 7958111 GAATGCCCTCCTTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAA 7958170 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||| |||| || || |||||||||||||| Sbjct 7958171 CCTCCAGGGTAATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 7958219 >seq2 Length=37273066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| || ||||| || || ||| ||||||||||||| || ||||| || | ||||| | Sbjct 4568284 CGTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCT 4568343 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| |||||| || | | || | ||||| | | || || || || || | Sbjct 4568344 TATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGA 4568403 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 ||| ||||| |||| || ||||||||||| ||||| |||| | |||| Sbjct 4568404 TAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT--CTGCAAGAAAT 4568451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || |||||||| | | | | |||| || ||||| || || Sbjct 4568015 CGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCC 4568074 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| ||||||||||||| || || || || | ||||| || || ||||||| || Sbjct 4568075 GGCAAAAATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 4568134 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || || || |||| ||||| |||||||| Sbjct 4568135 GACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGT 4568194 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 4568195 CTTGACGAAGATCTGCAT 4568212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934337853344