Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 >seq6 Length=31808207 Score = 131 bits (144), Expect = 2e-25 Identities = 283/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | || ||||| || || ||| |||| || | ||| Sbjct 31393705 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGC 31393764 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 31393765 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 31393824 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGC 14228 ||||| || |||||||| || || | |||||||| || | | | | || |||| | Sbjct 31393825 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCA--CCTCCGAGCCCAGCACCAC 31393882 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGG 14288 | ||| | |||||||| ||||||||||| ||||| ||||| || || || | || Sbjct 31393883 GCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGG 31393942 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 31393943 CCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGAACT 31394002 Query 14349 TGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 || |||| || || ||| || || | || ||||||| ||| || || || | Sbjct 31394003 CGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCA 31394062 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 | |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 31394063 GTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31394120 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||||||| | ||| || || || || |||| ||| || || | ||||| Sbjct 28188941 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 28189000 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||||||||||| | ||||| | || || || | ||||||||| || | Sbjct 28189001 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 28189060 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||| | | | |||| | || || || ||||||||||| | || || || || || Sbjct 28189061 ATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 28189120 Query 14276 TGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334 ||| | | | | ||| ||| | ||| || || | |||||| || |||||||| Sbjct 28189121 GCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTCCCACAAA 28189179 Query 14335 CATCTCCACAAA 14346 |||||||||||| Sbjct 28189180 CATCTCCACAAA 28189191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435107234720