Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=31808207 Score = 114 bits (126), Expect = 2e-20 Identities = 277/411 (67%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| |||||| | || || | ||| | || |||||| Sbjct 31393717 CGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGCCTGTTTGTCGCG 31393776 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 31393777 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 31393834 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 | || || || |||| |||||||| | | | | | ||||||| || ||| | || Sbjct 31393835 TGATGGTCTGCTCCCTCTCATCATTTCCA--CCTCCGAGCCCAGCACCACGCTGCCTCCC 31393892 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCA 9757 ||||||||||| |||||||||||||||||||| || | || || | || || Sbjct 31393893 GACGGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCG 31393950 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || |||| || | ||| || ||||| || |||| ||| || || | | ||| Sbjct 31393951 AACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGAACTCGGACGCG 31394010 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || || ||| || || | || ||||| | ||| || || || || ||||| Sbjct 31394011 GCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTC 31394070 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 31394071 CCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31394120 Score = 102 bits (112), Expect = 1e-16 Identities = 231/341 (68%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28188940 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28188999 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 28189000 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28189053 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| |||| || |||||||| ||||||| || || || Sbjct 28189054 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 28189113 Query 9730 GCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 ||| || ||| || | | ||| ||| ||||| || || || ||| || || | Sbjct 28189114 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTC 28189172 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9847 | ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 28189173 CCACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCT 28189231 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 28189232 CCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28189272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880