Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3 517 1e-141 seq8 140 4e-28 >seq3 Length=38314702 Score = 517 bits (572), Expect = 1e-141 Identities = 651/894 (73%), Gaps = 0/894 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 24885058 TTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 24884999 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| || |||||||| || ||||| || || | | || | || Sbjct 24884998 TCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 24884939 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 24884938 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 24884879 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 24884878 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 24884819 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || |||||||||||||| ||||||||| Sbjct 24884818 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 24884759 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || || | ||||||||| | Sbjct 24884758 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 24884699 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 24884698 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 24884639 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||| ||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 24884638 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 24884579 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 24884578 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 24884519 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||||||||| || | ||||||| ||| || ||||| |||||||| || || Sbjct 24884518 ACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAAT 24884459 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| || || || ||||| ||||| || | |||||||| |||||| ||| || ||| Sbjct 24884458 ATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAAC 24884399 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | || ||||| ||||| Sbjct 24884398 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCT 24884339 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 24884338 TTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTT 24884279 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 24884278 GATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 24884219 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 24884218 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 >seq8 Length=21838022 Score = 140 bits (154), Expect = 4e-28 Identities = 204/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || || || || ||| || | || ||| | | ||| || || Sbjct 19555619 ACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCG 19555678 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||||||||| Sbjct 19555679 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCTAT 19555738 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || | |||| || | | Sbjct 19555739 AGATCTACCTCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTA 19555797 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || ||||| || || ||||| || || | Sbjct 19555798 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGA 19555857 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 19555858 CAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 19555903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494309475840