Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 seq4 102 6e-17 seq6 98.7 7e-16 seq2 98.7 7e-16 seq9 93.3 3e-14 >seq5 Length=26596109 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || || || ||||| ||| | Sbjct 7958903 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 7958844 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || ||| | || || || || Sbjct 7958843 GACACGATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATTCCACCTGACCA 7958785 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||||| || |||| |||||| | | |||||||| Sbjct 7958784 GCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACAA 7958725 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 7958724 CATTCAGAAAGAGTCCAC 7958707 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || ||||| || || || || ||||| || | Sbjct 7958220 AATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 7958161 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||||| ||| ||| ||||| || || | || || ||||| Sbjct 7958160 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 7958101 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | | ||||| ||||| || || || || | ||||| |||| |||||||| Sbjct 7958100 GCAGCCCTGA-TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 7958042 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || || |||||||| || || Sbjct 7958041 CATCCAGAACGAGTCCACCTTGCA 7958018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || ||||| || |||||| | || ||||| ||| | Sbjct 7958676 AATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTTTGGAGGTTGAGTCCTC 7958617 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| || || || || ||| | || || || || Sbjct 7958616 AGACACGATTGACAACGTGAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCA 7958557 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | || || || | || ||||| Sbjct 7958556 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGGACCTTGGCGGACTACAA 7958497 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 7958496 CATTCAGAAAGAGTCCAC 7958479 >seq4 Length=30391017 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || |||||||| | || ||||| ||| | Sbjct 26504842 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCT 26504901 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || ||||| || Sbjct 26504902 GACACGATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATTCCACCAGACCA 26504960 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || || | ||||| | | |||||||| Sbjct 26504961 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAA 26505020 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 26505021 CATCCAGAAGGAGTCCAC 26505038 >seq6 Length=31808207 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || ||||||||||| || || || || Sbjct 28434976 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCG 28434917 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 28434916 GACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGGATCCCTCCTGACCA 28434858 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || ||| || || | | |||||||| Sbjct 28434857 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAA 28434798 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 28434797 CATTCAGAAAGAGTCCAC 28434780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| ||||| ||||| ||| | Sbjct 28435204 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 28435145 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || | || | || | || ||||| || || | || || || || Sbjct 28435144 GATACAATTGACGATGTGAAGGCCAAGA-TTCAAGACAAGGAGGGCATTCCACCTGACCA 28435086 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| ||||| ||||| || || | ||||| | | |||||||| Sbjct 28435085 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 28435026 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 28435025 CATCCAGAAGGAGTCCAC 28435008 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || ||||| || | Sbjct 29029172 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 29029231 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| || || | || || || || Sbjct 29029232 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 29029291 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || || | || || | | ||||||||| Sbjct 29029292 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTTGCGGATTACAAC 29029351 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||||||| | || || || Sbjct 29029352 ATCCAAAAGGAGTCCACACTCCACTTGGT 29029380 >seq2 Length=37273066 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||||| || ||||| | | Sbjct 4567528 ATGCAGATCTTCGTGAAGACTTTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCC 4567469 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 4567468 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGGATTCCCCCAGACCA 4567410 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || ||||| || | |||||| | | ||| ||||| Sbjct 4567409 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGGCCGACTACAA 4567350 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 4567349 CATACAGAAGGAGTCCAC 4567332 >seq9 Length=18641908 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||||| ||||| |||||||| || |||||| Sbjct 12149798 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 12149857 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||| | | ||| |||||||| || || ||||| || Sbjct 12149858 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 12149901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096