Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 seq2 91.5 2e-13 >seq6 Length=31808207 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 4541550 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 4541609 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||| || ||| || |||||||| || || Sbjct 4541610 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAG 4541669 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 4541670 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 4541729 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 4541730 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4541770 >seq2 Length=37273066 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| || Sbjct 35540146 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 35540087 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| || | |||||| ||| || Sbjct 35540086 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 35540027 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929 || || ||||| || || ||||| | ||| |||||| | | || ||||| Sbjct 35540026 AGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCATA 35539971 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||||| || |||||||| ||||| | || || |||||| Sbjct 35539970 AATGCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 35539925 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 |||||||||||||| |||| | | | | ||| |||||||||||| ||| ||||| Sbjct 35540577 CTCTCTTTCATATTTCTTGTACAGATTC--TGAAACTCATCTCCCCAACAGTCAGCCAAA 35540520 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| ||||| | ||||||||| | ||| | | |||| || ||| Sbjct 35540519 CCTGGAGCTTCATTGGGACAAAACAATGACCAGTTTTCATTATTTTGCACCCTTTCCATG 35540460 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || ||||| || ||||| || ||| || ||||||| Sbjct 35540459 AACAGATCCGGAATCCAGAGTGCATAGAAAAGATCTC 35540423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934293059840