Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq8 120 3e-22 seq9 116 4e-21 seq7 116 4e-21 seq5 113 5e-20 seq11 104 3e-17 >seq1 Length=42845077 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || ||||| || ||| |||| || Sbjct 24053817 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTC 24053758 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 24053757 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 24053698 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | || |||| || | ||||||||| ||||| || | ||||||||| || Sbjct 24053697 CACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 24053638 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||| ||||| Sbjct 24053637 CCCCGTCAGGGTCTTCACGAAGATCTGCAT 24053608 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| | |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 32507265 AAACAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 32507324 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 32507325 TCACCACTATACTAC 32507339 >seq8 Length=28014461 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||||| ||| |||||| || || |||||||| || | | || | Sbjct 24290987 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGCGCGGCC 24290928 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || ||||||||||| || | || | || |||||| Sbjct 24290927 ATCCTCGAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 24290868 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | |||| || ||| | || ||||| ||| || || || | || | Sbjct 24290867 GTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 24290809 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||||| || | ||||| ||||||||||||||| Sbjct 24290808 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 24290771 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 3565235 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3565176 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 3565175 GATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 3565117 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 3565116 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 3565057 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 3565056 CGAAGATCTGCATCTT 3565041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || ||| | || || |||||||| |||||||| Sbjct 22386868 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAG 22386809 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 22386808 ATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 22386749 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || || || || || | || ||||| ||||| || || ||||| ||| Sbjct 22386748 TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTCACA 22386689 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 22386688 AAGATCTGCAT 22386678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| |||| || | || | || | ||| |||||| || || ||||| ||||| Sbjct 22387133 TCCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 22387074 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 22387073 AAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 22387014 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| || | |||| | | ||| | | | || || || || | Sbjct 22387013 AATCCCCTCCTTGTCC-TGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 22386955 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 22386954 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22386906 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| ||||| ||||| || || || || || | || || Sbjct 22387571 CACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTC 22387512 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||||||||| ||||||| ||||||||| | || | || |||||| ||| Sbjct 22387511 CAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTG 22387452 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| || || | | | | ||||| |||| || || || | || || || Sbjct 22387451 GATCTTCGCCTTCACATTGTCGATGGTGTCTGAGCTC---TCAACCTCCAGGGTAATAGT 22387395 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| || || ||||| || || || |||||| Sbjct 22387394 CTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 22387361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 22262605 AAAAATTGTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 22262546 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 22262545 TCACCACTATACTAC 22262531 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || |||| |||||||| || || || || |||| || || ||||| || || || Sbjct 24290094 CTCTTTCCGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAA 24290035 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | || | | |||||||||| ||| | || | |||| | Sbjct 24290034 GATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCC-TGAATCTTGGCCTTGA-CA 24289977 Query 43111 TCGCCA-CCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | ||||| || || || || | || ||||| ||||| || || ||||| Sbjct 24289976 TTGTGAGTTGTGTCAGAGGACTCAACCTCTAGGGTTATGGTATTGCCAGTGAGTGTCTTC 24289917 Query 43170 ACAAAGATTTGCATTTTTAC 43189 |||||||| ||||| | ||| Sbjct 24289916 ACAAAGATCTGCATCTGTAC 24289897 >seq9 Length=29411429 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 7709364 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 7709305 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | | |||||||||| ||| || || | ||| Sbjct 7709304 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 7709246 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||| || || ||||| || ||||| | Sbjct 7709245 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCA 7709186 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 7709185 CGAAGATCTGCATCTT 7709170 >seq7 Length=28646061 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| ||| |||||| || || || || ||||| || || || |||| || Sbjct 24916328 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCA 24916269 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| ||||||||||| | || | | |||||||||| | Sbjct 24916268 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGG 24916209 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | |||||| || || || || | ||||| || ||| Sbjct 24916208 ATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTG 24916149 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| |||||||| ||||| Sbjct 24916148 CCAGTAAGGGTCTTCACAAAGATCTGCAT 24916120 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || | || || |||||||| |||||||| Sbjct 26600250 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 26600191 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 26600190 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 26600131 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 26600130 GTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 26600071 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 26600070 AAAGATCTGCAT 26600059 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | |||| |||||| || || |||||||| || || || || | || || Sbjct 26601401 CACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTC 26601342 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||||||||| || || || ||||||||||| | || | || |||||||||| Sbjct 26601341 AAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 26601282 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || | ||| | | | |||||| ||| || || || | || ||||| | Sbjct 26601281 GATCTTCGCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCT 26601223 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 26601222 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 26601192 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || |||||||| || || || || | || || |||||| Sbjct 24916550 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGC 24916491 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || |||||||| ||||| ||||||||||| | || | | |||||||||| ||| || Sbjct 24916490 TTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTG 24916431 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | | | | |||||| ||| || || || | |||||||| ||||| || Sbjct 24916430 GCCTTCACATTGTCGATCGTGTCAGACGACTCAACCTCCAGGGTGATGGTCTTGCCGGTG 24916371 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| ||||| Sbjct 24916370 AGGGTCTTCACGAAGATCTGCAT 24916348 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| ||||| || Sbjct 26600927 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAA 26600868 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 26600867 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 26600808 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||| || || || | |||||||| ||||| || | ||||| || Sbjct 26600807 GTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 26600748 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 26600747 GAAGATCTGCAT 26600736 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||| || || | || || |||||||| || ||||| Sbjct 26601155 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 26601096 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 26601095 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 26601036 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||||||| ||||| || || ||||| || Sbjct 26601035 GTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGAC 26600976 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 26600975 GAAGATCTGCAT 26600964 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || || || || || | || || |||||||| ||||| || Sbjct 24916082 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 24916023 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 24916022 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 24915963 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 24915962 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACG 24915903 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 24915902 AATATTTGCAT 24915892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 24916778 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 24916719 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||| | || | || |||||| ||| ||| || Sbjct 24916718 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 24916659 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 24916658 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 24916600 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| ||||| Sbjct 24916599 GAGGGTCTTCACGAAGATCTGCAT 24916576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||||||| || || | || || |||||||| |||||||| Sbjct 26600699 CTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 26600640 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 ||||| ||||||||||| | || | || |||||| || Sbjct 26600639 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATC 26600601 >seq5 Length=35065507 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| |||||||||||||| ||||| ||| || |||||||| || || || Sbjct 30648669 CTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAA 30648728 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 30648729 GATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 30648788 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || |||| |||||||| || || || | ||||| || Sbjct 30648789 GTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCAC 30648848 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 30648849 AAAGATCTGCAT 30648860 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 3012156 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3012215 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3012216 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3012274 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||||| ||||| || || |||| Sbjct 3012275 TGTCGATGGTGTCCGAGCTC---TCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCT 3012331 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 3012332 TGACAAAGATCTGCAT 3012347 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || |||| | || || |||||||| |||||||| Sbjct 3013094 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 3013153 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||| || ||| || |||| | Sbjct 3013154 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATT 3013213 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || ||||| |||| ||||| || ||||| || | ||||| || Sbjct 3013214 ATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCAC 3013273 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 3013274 AAAGATCTGCAT 3013285 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | || | ||||| ||||| ||| |||||| || || |||| Sbjct 30648398 CCTATTGGCCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGT 30648457 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 |||| ||||| || || | || || |||||||| || ||||| || | |||||||||| Sbjct 30648458 AATCTGCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGT 30648517 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | | |||||||||| ||| || || | ||| | | | ||| | Sbjct 30648518 CCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATGAGAA 30648576 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | ||| ||||| ||||| || || ||||| ||||| || ||||| Sbjct 30648577 GACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 30648632 >seq11 Length=26703665 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| ||||| || || || | || || |||||||| |||||||| Sbjct 4117621 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCAGCGAA 4117680 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||| ||| ||| || || | | Sbjct 4117681 GATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGCCTTCACATT 4117740 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||||| ||||| || || || || || Sbjct 4117741 GTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 4117800 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 4117801 AAAGATCTGCAT 4117812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817514227360