Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq1 98.7 2e-15 seq5 95.1 3e-14 seq4 86.0 1e-11 >seq9 Length=29411429 Score = 114 bits (126), Expect = 3e-20 Identities = 303/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 1287143 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1287084 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | |||| ||| | ||| Sbjct 1287083 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 1287024 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 1287023 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1286964 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || | Sbjct 1286963 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1286905 Query 157497 GAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | | || | ||| | ||| | | ||||| ||| | | | || Sbjct 1286904 GGACGCGTGACTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 1286847 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAA 157611 || ||| || || ||||| | || |||||| ||| | ||| | | || | ||| Sbjct 1286846 GCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA- 1286788 Query 157612 CTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTC 157671 || | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 1286787 -GTCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 1286730 Query 157672 CAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| |||| ||| |||| Sbjct 1286729 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGA 1286698 Score = 104 bits (114), Expect = 5e-17 Identities = 297/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 8530430 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGATATGAGCTCCAT 8530489 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || ||| | || | Sbjct 8530490 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 8530549 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 8530550 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 8530609 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || Sbjct 8530610 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 8530668 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | || || | ||| | ||| | | ||||| ||| | | | || Sbjct 8530669 GGACGCGCGCCTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 8530726 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | Sbjct 8530727 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 8530786 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAG 157674 | ||||||||| |||||| ||||||||||||| || || ||| | ||||| | Sbjct 8530787 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGAC 8530846 Query 157675 ACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 |||| |||| |||| || | ||| |||| Sbjct 8530847 GCAGGCGAAGGCGACGAGGCGCTCGGCGA 8530875 >seq1 Length=42845077 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| |||| |||||| || ||||||| || || ||||| ||| || Sbjct 6095390 GACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTT 6095449 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | || |||||||| ||| |||| | || || || ||| Sbjct 6095450 GGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTGGGTATACAC 6095509 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 6095510 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 6095568 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| ||||||| || ||||| || || || Sbjct 6095569 TCATGCTTCACCGACCCTTTTCAATGCTGGCAC 6095601 >seq5 Length=35065507 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 33030096 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 33030155 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 33030156 AGTTGTTGGGAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 33030215 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 33030216 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 33030273 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 33030274 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 33030311 >seq4 Length=20076173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCG-GGCGCCGGTGACGAAGAGATAAAGAAAGCGT 239820 ||||||||| || | || || | ||| ||||||| | ||| ||||| | | |||| Sbjct 19333717 GTACTACGACCTCCTCGGCGT-GCCGCGCGGCGCCGACGGCGACGAGATCAGGCGCGCGT 19333775 Query 239821 ACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGC 239880 ||||||| |||| || |||||||||||||||| ||||||| |||| ||||||| Sbjct 19333776 ACCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAGGCGTTCAAGG 19333835 Query 239881 AGTTGACCGATGTGTACGACGTGCTCAAAGATCCCGCTAAGCGGCGGGTGTACGAC 239936 || || || | |||| | |||||| || ||||| ||| ||| |||||| Sbjct 19333836 AGGTGGCCCGCGCGTACCAGGTGCTCGGCGACCCCGCCCTGCGCGAGGTCTACGAC 19333891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416