Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9 132 4e-26 seq1 129 5e-25 seq12 111 1e-19 seq5 107 2e-18 seq8 105 5e-18 seq7 102 6e-17 >seq9 Length=29411429 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| ||| Sbjct 7709381 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 7709322 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| |||||||| || | |||||||||||| Sbjct 7709321 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 7709262 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || |||||||| Sbjct 7709261 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 7709202 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 7709201 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 7709169 >seq1 Length=42845077 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 24053816 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCC 24053757 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| ||||| || || | |||||||||||| Sbjct 24053756 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGC 24053697 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || ||| || | | |||| | | ||||||||||| || || ||||| Sbjct 24053696 ACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTC 24053637 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 24053636 CCCGTCAGGGTCTTCACGAAGATCTGCAT 24053608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 24058297 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 24058238 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| || | |||||| |||| || || || |||||| |||| Sbjct 24058237 CTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCCCTGTC 24058187 >seq12 Length=20407407 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | |||||||| || || |||||||||||||||||||||| Sbjct 12157702 GCCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGC 12157643 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 |||| ||| | || ||||| || || |||||||||||||| |||||||| || ||||| Sbjct 12157642 CAGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGG 12157583 Query 45229 CACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 12157582 GATCCCTTCCTTGTCC 12157567 >seq5 Length=35065507 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| | || || Sbjct 3012139 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCG 3012198 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 3012199 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 3012258 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||| ||||||| ||| || |||||| Sbjct 3012259 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTG 3012318 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 3012319 CCTGTGAGGGTCTTGACAAAGATCTGCAT 3012347 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| || ||| | || ||| Sbjct 3011911 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCC 3011970 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 3011971 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 3012030 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || ||||| Sbjct 3012031 ATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTC 3012090 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| ||||| ||||| Sbjct 3012091 CCAGTCAAGGTCTTCACGAAGATCTGCAT 3012119 >seq8 Length=28014461 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| | || || || || Sbjct 3565247 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTG 3565188 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | || ||||||||| || || Sbjct 3565187 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTT 3565128 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||||||||||| || || ||||| ||||| Sbjct 3565127 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 3565068 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 3565067 CAGGGTCTTCACGAAGATCTGCATCTTG 3565040 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || ||| Sbjct 22387570 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 22387511 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | | ||| ||||| || || | |||||||| ||| Sbjct 22387510 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 22387451 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| |||||| |||||| Sbjct 22387450 ATCTTCGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTG 22387391 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || || || ||||| Sbjct 22387390 CCAGTGAGAGTCTTGACGAAAATCTGCAT 22387362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || | | | || || || || Sbjct 22387109 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTG 22387050 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | |||||||||||| || || Sbjct 22387049 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 22386990 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | || | ||| ||||| | ||| || |||||||| || Sbjct 22386989 TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGT 22386930 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||||||| Sbjct 22386929 CAAGGTCTTGACAAAGATTTGCATG 22386905 >seq7 Length=28646061 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| ||| ||| | || || || || Sbjct 26600262 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTG 26600203 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 26600202 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 26600143 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | ||| || |||||||| || Sbjct 26600142 GGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 26600083 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 26600082 GAGGGTCTTCACAAAGATCTGCAT 26600059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || | |||| ||| || ||| ||||||||| ||||||||||| | Sbjct 26601190 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26601131 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || ||||| || || |||||||| || | ||||| ||||| || || Sbjct 26601130 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 26601071 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | ||||| ||| ||| Sbjct 26601070 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACC 26601011 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 26601010 TCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 26600964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075142220252